RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 I3L4J1 428 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SYN3O14994 580 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC16A4O15374 487 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CCL16O15467 120 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TOM1L1O75674 476 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MAPTP10636 758 aaKnown RBP13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PLS3P13797 630 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 RPL9P32969 192 aaKnown RBP13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 STARD6P59095 220 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ANGPT1Q15389 498 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TMEM119Q4V9L6 283 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 LIN9Q5TKA1 542 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 LRRC15Q8TF66 581 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 DDX23Q9BUQ8 820 aaKnown RBP13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 HAPLN2Q9GZV7 340 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TBC1D17Q9HA65 648 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC38A7Q9NVC3 462 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 HCFC1R1Q9NWW0 138 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KCND2Q9NZV8 630 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KCNG1Q9UIX4 513 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KCNH3Q9ULD8 1083 aa13.42□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 OTOGLQ3ZCN5 2332 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PODXLO00592 558 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC26A4O43511 780 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 XYLBO75191 536 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ADRB2P07550 413 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GLULP15104 373 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 YARSP54577 528 aaKnown RBP13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 OSTNP61366 133 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GPC5P78333 572 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ROR1Q01973 937 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MCL1Q07820 350 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ZBTB6Q15916 424 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 VARS2Q5ST30 1063 aaKnown RBP13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ZPBP2Q6X784 338 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 NPAS3Q8IXF0 933 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TCEAL8Q8IYN2 117 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ST13P5Q8NFI4 369 aaPredicted RBP13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 C18orf25Q96B23 403 aaPredicted RBP13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SUSD3Q96L08 255 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 CA14Q9ULX7 337 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 KIF3AQ9Y496 699 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 MIA3Q5JRA6 1907 aa13.41□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 TTC26A0AVF1 554 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 WDR27A2RRH5 827 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FAM189A1O60320 539 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 PLA2G4BP0C869 781 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ATF2P15336 505 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 GJB2P29033 226 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 NCKAP1LP55160 1127 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 SLC5A9Q2M3M2 681 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 FRMD5Q7Z6J6 570 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 ARHGEF3Q9NR81 526 aa13.4□□□□□ -0.26
MSH5-SAPCD1-205ENST00000476085 VWA3AA6NCI4 1184 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SEC24AO95486 1093 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 RHOP08100 348 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 LRPAP1P30533 357 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 AARSP49588 968 aaKnown RBP eCLIP13.39□□□□□ -0.274e-6■■■■■ 30.6
MSH5-SAPCD1-205ENST00000476085 ZNF131P52739 623 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SMTNP53814 917 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 RAD51AP2Q09MP3 1159 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 NOLC1Q14978 699 aaKnown RBP eCLIP13.39□□□□□ -0.274e-7■■■■□ 22.5
MSH5-SAPCD1-205ENST00000476085 PABPC1LQ4VXU2 614 aaKnown RBP13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PRSS36Q5K4E3 855 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MCTP1Q6DN14 999 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MTSS1LQ765P7 747 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 AK8Q96MA6 479 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 FIZ1Q96SL8 496 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TCHPQ9BT92 498 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PLEKHA5Q9HAU0 1116 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 BLOC1S4Q9NUP1 217 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 GDE1Q9NZC3 331 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 FBXL5Q9UKA1 691 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SIT1Q9Y3P8 196 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 COL4A3Q01955 1670 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 DMXL1Q9Y485 3027 aa13.39□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ANK1P16157 1881 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 NPHP3-ACAD11A0A0J9YXS1 232 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SHISA7A6NL88 538 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 M0QZQ0 153 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 NRG2O14511 850 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 CLDN3O15551 220 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MICAL2O94851 1124 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PIGRP01833 764 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PTPN2P17706 415 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 SEZ6Q53EL9 994 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TPGS2Q68CL5 300 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MAML2Q8IZL2 1156 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 TMEM130Q8N3G9 435 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 BEST2Q8NFU1 509 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PJA1Q8NG27 643 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 NKD2Q969F2 451 aaPredicted RBP13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PLIN2Q99541 437 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PLA2G2FQ9BZM2 168 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 ODF2LQ9ULJ1 636 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 MAFFQ9ULX9 164 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 POLIQ9UNA4 740 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 GPR179Q6PRD1 2367 aa13.38□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 PATJQ8NI35 1801 aa13.37□□□□□ -0.27
MSH5-SAPCD1-205ENST00000476085 H7C4K7 107 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms