RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 VNN1O95497 513 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 ASS1P00966 412 aaKnown RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 CHRNA1P02708 482 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 CCL5P13501 91 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 ATICP31939 592 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 BPIFB4P59827 614 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 YWHAEP62258 255 aaKnown RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 NOP14P78316 857 aaKnown RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 SLC18A3Q16572 532 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 ASTE1Q2TB18 679 aaPredicted RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 ARHGAP29Q52LW3 1261 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 DNTTIP2Q5QJE6 756 aaKnown RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 NYAP1Q6ZVC0 841 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 KIAA1328Q86T90 577 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 EFCAB13Q8IY85 973 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 FAM71AQ8IYT1 594 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 CAGE1Q8TC20 777 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 SNX27Q96L92 541 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 DESI2Q9BSY9 194 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 GPR88Q9GZN0 384 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 HAUS4Q9H6D7 363 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 AJAP1Q9UKB5 411 aaPredicted RBP13.8□□□□□ -0.2
VPS13D-205ENST00000473099 ITGA11Q9UKX5 1188 aa13.8□□□□□ -0.2
VPS13D-205ENST00000473099 USP27XA6NNY8 438 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 FOXN3O00409 490 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 STAU1O95793 577 aaKnown RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 SKIP12755 728 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 P4HA1P13674 534 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 ZSCAN20P17040 1043 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 RAB27AP51159 221 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 VAV2P52735 878 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 ARID5AQ03989 594 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 CUL2Q13617 745 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 TRIM71Q2Q1W2 868 aaKnown RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 FBXO47Q5MNV8 452 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 TWF2Q6IBS0 349 aaKnown RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 JADE1Q6IE81 842 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 FBXO46Q6PJ61 603 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 TMEM192Q8IY95 271 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 ACRBPQ8NEB7 543 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 C16orf45Q96MC5 204 aaPredicted RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 KREMEN1Q96MU8 473 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 TRAIPQ9BWF2 469 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 IFIH1Q9BYX4 1025 aaKnown RBP13.79□□□□□ -0.2
VPS13D-205ENST00000473099 RNF208Q9H0X6 261 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 VRTNQ9H8Y1 702 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 MYO1AQ9UBC5 1043 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 ST3GAL5Q9UNP4 418 aa13.79□□□□□ -0.2
VPS13D-205ENST00000473099 TLR3O15455 904 aaKnown RBP13.78□□□□□ -0.2
VPS13D-205ENST00000473099 PLEKP08567 350 aaPredicted RBP13.78□□□□□ -0.2
VPS13D-205ENST00000473099 NFICP08651 508 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 CTSHP09668 335 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 TNNT1P13805 278 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 CDK7P50613 346 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 PTK2Q05397 1052 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 PAK2Q13177 524 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 BFSP2Q13515 415 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 ZNF699Q32M78 642 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 UBXN11Q5T124 520 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 TTC39CQ8N584 583 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 BEST2Q8NFU1 509 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 WNT8BQ93098 351 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 DEFB118Q96PH6 123 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.78□□□□□ -0.2
VPS13D-205ENST00000473099 EIF2AQ9BY44 585 aaKnown RBP13.78□□□□□ -0.2
VPS13D-205ENST00000473099 NIF3L1Q9GZT8 377 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 ERVK-5Q9HDB9 667 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 TRMT13Q9NUP7 481 aaKnown RBP13.78□□□□□ -0.2
VPS13D-205ENST00000473099 SNTG2Q9NY99 539 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 CNTN3Q9P232 1028 aa13.78□□□□□ -0.2
VPS13D-205ENST00000473099 PJA2O43164 708 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 KIF5CO60282 957 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 LRRN2O75325 713 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 RECQL4O94761 1208 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 CLSTN1O94985 981 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 CD4P01730 458 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 MAGEA1P43355 309 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 PDE6CP51160 858 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 RBP5P82980 135 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 KIF5AQ12840 1032 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 NFX1Q12986 1120 aaKnown RBP13.77□□□□□ -0.21
VPS13D-205ENST00000473099 XKR4Q5GH76 650 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 ALKAL1Q6UXT8 129 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 MICAL3Q7RTP6 2002 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF571Q7Z3V5 609 aaPredicted RBP13.77□□□□□ -0.21
VPS13D-205ENST00000473099 ZNF677Q86XU0 584 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 TATDN2Q93075 761 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 KIF12Q96FN5 646 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 PI4K2AQ9BTU6 479 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 NXF3Q9H4D5 531 aaKnown RBP13.77□□□□□ -0.21
VPS13D-205ENST00000473099 INTUQ9ULD6 942 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 UBQLN1Q9UMX0 589 aaKnown RBP13.77□□□□□ -0.21
VPS13D-205ENST00000473099 IPPQ9Y573 584 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 PCDHA13Q9Y5I0 950 aa13.77□□□□□ -0.21
VPS13D-205ENST00000473099 SCN5AQ14524 2016 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 HTTP42858 3142 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 CST3P01034 146 aaPredicted RBP13.76□□□□□ -0.21
VPS13D-205ENST00000473099 CKBP12277 381 aa13.76□□□□□ -0.21
VPS13D-205ENST00000473099 KCNE1P15382 129 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms