RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 POLR3FQ9H1D9 316 aaPredicted RBP10.32□□□□□ -0.76
VCL-204ENST00000472585 PDZD7Q9H5P4 517 aa10.32□□□□□ -0.76
VCL-204ENST00000472585 HEBP1Q9NRV9 189 aa10.32□□□□□ -0.76
VCL-204ENST00000472585 ANKEF1Q9NU02 776 aa10.32□□□□□ -0.76
VCL-204ENST00000472585 I3L4J1 428 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 MAN2B1O00754 1011 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 CPLX1O14810 134 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 DGAT1O75907 488 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 FGFR3P22607 806 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 FCARP24071 287 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 HOXA9P31269 272 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 HOXC13P31276 330 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 DSG2Q14126 1118 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 TFDP1Q14186 410 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 CENPQQ7L2Z9 268 aaPredicted RBP10.31□□□□□ -0.76
VCL-204ENST00000472585 PLPP6Q8IY26 295 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 FAM177A1Q8N128 213 aaPredicted RBP10.31□□□□□ -0.76
VCL-204ENST00000472585 C12orf50Q8NA57 414 aaPredicted RBP10.31□□□□□ -0.76
VCL-204ENST00000472585 TCEAL4Q96EI5 215 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 MCRS1Q96EZ8 462 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 MTMR9Q96QG7 549 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 TRIM6Q9C030 488 aaPredicted RBP10.31□□□□□ -0.76
VCL-204ENST00000472585 TPCN1Q9ULQ1 816 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 GREB1Q4ZG55 1949 aa10.31□□□□□ -0.76
VCL-204ENST00000472585 SF3B1O75533 1304 aaKnown RBP eCLIP10.31□□□□□ -0.76
VCL-204ENST00000472585 SPAG17Q6Q759 2223 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 ZZEF1O43149 2961 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 USO1O60763 962 aaKnown RBP10.3□□□□□ -0.76
VCL-204ENST00000472585 RECQL4O94761 1208 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 THP07101 528 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 POU2F2P09086 479 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 TKTP29401 623 aaKnown RBP10.3□□□□□ -0.76
VCL-204ENST00000472585 CNR2P34972 360 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 CCR2P41597 374 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 NCBP1Q09161 790 aaKnown RBP10.3□□□□□ -0.76
VCL-204ENST00000472585 FAM187BQ17R55 369 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 UVSSAQ2YD98 709 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 LCE2DQ5TA82 110 aaPredicted RBP10.3□□□□□ -0.76
VCL-204ENST00000472585 CDCA2Q69YH5 1023 aaPredicted RBP10.3□□□□□ -0.76
VCL-204ENST00000472585 CEP68Q76N32 757 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 TMEM130Q8N3G9 435 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 ZSWIM3Q96MP5 696 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 TM6SF1Q9BZW5 370 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 CCDC113Q9H0I3 377 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 TMEM60Q9H2L4 133 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 CHRDQ9H2X0 955 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 GOLGA2P5Q9HBQ8 144 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 MTRRQ9UBK8 725 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 PCDHA12Q9UN75 941 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 CYP46A1Q9Y6A2 500 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 CDY1Q9Y6F8 540 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 IGF2RP11717 2491 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 NCANO14594 1321 aa10.3□□□□□ -0.76
VCL-204ENST00000472585 ZMYM2Q9UBW7 1377 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 LRRIQ4A6NIV6 560 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 MEFVO15553 781 aaPredicted RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 MARCH6O60337 910 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 PFKFB2O60825 505 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 MOSPD3O75425 235 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 MED24O75448 989 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 ECI2O75521 394 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 SEC24AO95486 1093 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 RHOP08100 348 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 CEBPBP17676 345 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 TXKP42681 527 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 BRCC3P46736 316 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 CXCL12P48061 93 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 CLCNKBP51801 687 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 SOX4Q06945 474 aaPredicted RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 PABPC1LQ4VXU2 614 aaKnown RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 WDR44Q5JSH3 913 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 GLRA4Q5JXX5 417 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 PRSS36Q5K4E3 855 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 NT5DC1Q5TFE4 455 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 CATSPER3Q86XQ3 398 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 SLFN12Q8IYM2 578 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 HACE1Q8IYU2 909 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 DNASE1L2Q92874 299 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 MARVELD3Q96A59 401 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 DDX27Q96GQ7 796 aaKnown RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 PPP1R10Q96QC0 940 aaKnown RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 TTC12Q9H892 705 aaPredicted RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 BRD9Q9H8M2 597 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 LMAN1LQ9HAT1 526 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 PDRG1Q9NUG6 133 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 KCNH3Q9ULD8 1083 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 ZMIZ1Q9ULJ6 1067 aa10.29□□□□□ -0.76
VCL-204ENST00000472585 MRPS23Q9Y3D9 190 aaKnown RBP10.29□□□□□ -0.76
VCL-204ENST00000472585 BTBD18B2RXH4 712 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 CHURC1-FNTBB4DL54 471 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 HRO43593 1189 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 ABLIM3O94929 683 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 XRCC6P12956 609 aaKnown RBP eCLIP10.28□□□□□ -0.76
VCL-204ENST00000472585 FNTBP49356 437 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 LIMK1P53667 647 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 GAS6Q14393 721 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 GRM2Q14416 872 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 ECM1Q16610 540 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 UPP1Q16831 310 aa10.28□□□□□ -0.76
VCL-204ENST00000472585 FAM78AQ5JUQ0 283 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms