RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 OR6B2Q6IFH4 312 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 CPLX4Q7Z7G2 160 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 RHOT2Q8IXI1 618 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 TJP2Q9UDY2 1190 aa14.65□□□□□ -0.06
CCDC88A-211ENST00000471947 YBX3P16989 372 aaKnown RBP eCLIP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 MARSP56192 900 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 PPP6R3Q5H9R7 873 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 WDR93Q6P2C0 686 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 CATSPER4Q7RTX7 472 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 ERICH1Q86X53 443 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 ATP8B4Q8TF62 1192 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 MRPL4Q9BYD3 311 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 DMAC2Q9NW81 257 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 CACNG4Q9UBN1 327 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 MTRF1LQ9UGC7 380 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 EXTL3O43909 919 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 CYP2C19P33261 490 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 ACTN2P35609 894 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 TTLL4Q14679 1199 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 PPP2R5DQ14738 602 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 PAN2Q504Q3 1202 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 C1orf220Q5T0J3 134 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 ATF7IP2Q5U623 682 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 LBX2Q6XYB7 198 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 JAMLQ86YT9 394 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 MED4Q9NPJ6 270 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 CHST7Q9NS84 486 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 LAMB1P07942 1786 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 SBF2Q86WG5 1849 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 SPATA31C2B4DYI2 1134 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 SGK1O00141 431 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 KIAA0754O94854 1291 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 FARP2O94887 1054 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 EDN1P05305 212 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 ADORA2AP29274 412 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 HSD17B3P37058 310 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 GPC3P51654 580 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 TUBB4BP68371 445 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 ALCAMQ13740 583 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 GDAP1Q8TB36 358 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 FAM149B1Q96BN6 582 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 LRRC45Q96CN5 670 aa14.64□□□□□ -0.07
CCDC88A-211ENST00000471947 COL24A1Q17RW2 1714 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 PDHXO00330 501 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 ZSCAN5DPP0CG00 497 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 NR1D1P20393 614 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 AKAP5P24588 427 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 BEX3Q00994 111 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 ZC3H18Q86VM9 953 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 PLVAPQ9BX97 442 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 VPS37BQ9H9H4 285 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 JAM2P57087 298 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 CDR2Q01850 454 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 CUL2Q13617 745 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 LONRF1Q17RB8 773 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 ZNF667Q5HYK9 610 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 ANKRD36BP1Q96IX9 119 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 LPIN3Q9BQK8 851 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 MINDY3Q9H8M7 445 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 APOBEC3GQ9HC16 384 aaKnown RBP14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 SNX9Q9Y5X1 595 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 MYL3P08590 195 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 TCF4P15884 667 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 CHRNB2P17787 502 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 DUOXA2Q1HG44 320 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 EMBQ6PCB8 327 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 ARMCX2Q7L311 632 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 TAS1R3Q7RTX0 852 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 OR6B3Q8NGW1 331 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 BORCS6Q96GS4 357 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 NAP1L3Q99457 506 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 OSMRQ99650 979 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 RAB17Q9H0T7 212 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 RBPJLQ9UBG7 517 aa14.63□□□□□ -0.07
CCDC88A-211ENST00000471947 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 DCDC2CA8MYV0 355 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 F8VP50 259 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 EBAG9O00559 213 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 ETS1P14921 441 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 KRT17Q04695 432 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 CHST13Q8NET6 341 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 ZBED3Q96IU2 234 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 SEMA4AQ9H3S1 761 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 GPATCH2LQ9NWQ4 482 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 PNMA2Q9UL42 364 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 TTLL3Q9Y4R7 772 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 C10orf71Q711Q0 1435 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 M0QYV0 167 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 RGS16O15492 202 aaPredicted RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 ATP8B1O43520 1251 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 NPTXRO95502 500 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 ECEL1O95672 775 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 PSMA2P25787 234 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 ADORA2BP29275 332 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 POLR2BP30876 1174 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 PSMC1P62191 440 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 UBAP2Q5T6F2 1119 aaKnown RBP14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 HELQQ8TDG4 1101 aa14.62□□□□□ -0.07
CCDC88A-211ENST00000471947 KIF12Q96FN5 646 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms