RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 ZSCAN20P17040 1043 aaPredicted RBP10.7□□□□□ -0.7
SF3A1-207ENST00000471342 ACO1P21399 889 aaKnown RBP10.7□□□□□ -0.7
SF3A1-207ENST00000471342 MYL6P60660 151 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 IKBKEQ14164 716 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 KYAT1Q16773 422 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 UPP1Q16831 310 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 SPOPLQ6IQ16 392 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 NPAS4Q8IUM7 802 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 VSTM4Q8IW00 320 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 CD302Q8IX05 232 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 EHBP1Q8NDI1 1231 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 RABGGTAQ92696 567 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 MRFAP1L1Q96HT8 127 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 ADPGKQ9BRR6 497 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 PI4K2AQ9BTU6 479 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 CCDC94Q9BW85 323 aaPredicted RBP10.7□□□□□ -0.7
SF3A1-207ENST00000471342 RSAD1Q9HA92 442 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 DNAJB4Q9UDY4 337 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 NUB1Q9Y5A7 615 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 MICAL3Q7RTP6 2002 aa10.7□□□□□ -0.7
SF3A1-207ENST00000471342 BECN2A8MW95 431 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 P4HA2O15460 535 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 BAIAP3O94812 1187 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 ADCY5O95622 1261 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 FGFR1OPO95684 399 aaKnown RBP10.69□□□□□ -0.7
SF3A1-207ENST00000471342 STAU1O95793 577 aaKnown RBP10.69□□□□□ -0.7
SF3A1-207ENST00000471342 ASS1P00966 412 aaKnown RBP10.69□□□□□ -0.7
SF3A1-207ENST00000471342 POMCP01189 267 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 HLA-DRAP01903 254 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 FGBP02675 491 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 CYP3A5P20815 502 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 UBASH3AP57075 661 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 MLLT1Q03111 559 aaPredicted RBP10.69□□□□□ -0.7
SF3A1-207ENST00000471342 PPIGQ13427 754 aaKnown RBP eCLIP10.69□□□□□ -0.7
SF3A1-207ENST00000471342 SYCP1Q15431 976 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 CCDC40Q4G0X9 1142 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 C9orf57Q5W0N0 161 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 TRIM65Q6PJ69 517 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 NT5DC4Q86YG4 428 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 WHAMMQ8TF30 809 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 CRACR2AQ9BSW2 395 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 SYT11Q9BT88 431 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 RAB20Q9NX57 234 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 PARP2Q9UGN5 583 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.69□□□□□ -0.7
SF3A1-207ENST00000471342 CDH23Q9H251 3354 aa10.69□□□□□ -0.7
SF3A1-207ENST00000471342 GOLGA6L3A6NEY3 463 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 GRXCR1A8MXD5 290 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 GJB5O95377 273 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 GYPCP04921 128 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 SKIP12755 728 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 ASPAP45381 313 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 MTIF2P46199 727 aaKnown RBP10.68□□□□□ -0.7
SF3A1-207ENST00000471342 MRE11P49959 708 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 FXR1P51114 621 aaKnown RBP eCLIP10.68□□□□□ -0.7
SF3A1-207ENST00000471342 CLCNKBP51801 687 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 JAM2P57087 298 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 NCBP1Q09161 790 aaKnown RBP10.68□□□□□ -0.7
SF3A1-207ENST00000471342 TMEM132DQ14C87 1099 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 DUOXA2Q1HG44 320 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 DCAF17Q5H9S7 520 aaPredicted RBP10.68□□□□□ -0.7
SF3A1-207ENST00000471342 FIGNQ5HY92 759 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 NOMO2Q5JPE7 1267 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 KLHDC7AQ5VTJ3 777 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 KRT39Q6A163 491 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 FAM114A1Q8IWE2 563 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 RPUSD2Q8IZ73 545 aaKnown RBP10.68□□□□□ -0.7
SF3A1-207ENST00000471342 DPF3Q92784 378 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 KIF12Q96FN5 646 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 TSPAN18Q96SJ8 248 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 ARID3AQ99856 593 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 RTP3Q9BQQ7 232 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 ZSWIM1Q9BR11 485 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 INTS2Q9H0H0 1204 aaKnown RBP10.68□□□□□ -0.7
SF3A1-207ENST00000471342 PLCB1Q9NQ66 1216 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 CNTN6Q9UQ52 1028 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 RALGAPA2Q2PPJ7 1873 aa10.68□□□□□ -0.7
SF3A1-207ENST00000471342 ITIH6Q6UXX5 1313 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 GOLGA6L19H0YKK7 550 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 TBC1D4O60343 1298 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 ITGB3P05106 788 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 GALTP07902 379 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 PRKCSHP14314 528 aaPredicted RBP10.67□□□□□ -0.7
SF3A1-207ENST00000471342 MYOGP15173 224 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 FECHP22830 423 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 CDC25BP30305 580 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 BMP8BP34820 402 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 MATR3P43243 847 aaKnown RBP eCLIP10.67□□□□□ -0.7
SF3A1-207ENST00000471342 SLC11A1P49279 550 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 MXI1P50539 228 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 TFAMQ00059 246 aaKnown RBP10.67□□□□□ -0.7
SF3A1-207ENST00000471342 PPP2R3AQ06190 1150 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 GOLGA8FQ08AF8 430 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 GOLGA8DPQ0D2H9 430 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 NCOA4Q13772 614 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 SURF1Q15526 300 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 KIAA0319Q5VV43 1072 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 IQCEQ6IPM2 695 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 WDR59Q6PJI9 974 aa10.67□□□□□ -0.7
SF3A1-207ENST00000471342 TAS1R1Q7RTX1 841 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms