RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MEFVO15553 781 aaPredicted RBP18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 CFHP08603 1231 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 UBA7P41226 1012 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 NCKAP1LP55160 1127 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 NTHL1P78549 312 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 CACNB1Q02641 598 aaPredicted RBP18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 MCL1Q07820 350 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 SLC10A6Q3KNW5 377 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 C18orf25Q96B23 403 aaPredicted RBP18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 RTP3Q9BQQ7 232 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 CDH7Q9ULB5 785 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 ODF2LQ9ULJ1 636 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 POLIQ9UNA4 740 aa18.11■□□□□ 0.49
CCDC28B-204ENST00000469003 CLDN3O15551 220 aa18.1■□□□□ 0.49
CCDC28B-204ENST00000469003 VARS2Q5ST30 1063 aaKnown RBP18.1■□□□□ 0.49
CCDC28B-204ENST00000469003 SLC8B1Q6J4K2 584 aa18.1■□□□□ 0.49
CCDC28B-204ENST00000469003 NUB1Q9Y5A7 615 aa18.1■□□□□ 0.49
CCDC28B-204ENST00000469003 NUMBLQ9Y6R0 609 aa18.1■□□□□ 0.49
CCDC28B-204ENST00000469003 KRBA1A5PL33 1030 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 PI15O43692 258 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 TBC1D4O60343 1298 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 SCP2P22307 547 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 LONP1P36776 959 aaKnown RBP18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 ROR1Q01973 937 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 SEZ6Q53EL9 994 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 HAUS6Q7Z4H7 955 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 GPBP1Q86WP2 473 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 ZNF461Q8TAF7 563 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 BICD1Q96G01 975 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 SUSD3Q96L08 255 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 REEP2Q9BRK0 252 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 HAPLN2Q9GZV7 340 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 PLEKHA5Q9HAU0 1116 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 SLC2A4RGQ9NR83 387 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 BLOC1S4Q9NUP1 217 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 NOTCH4Q99466 2003 aa18.09■□□□□ 0.49
CCDC28B-204ENST00000469003 H7C4K7 107 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 ABLIM3O94929 683 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 CLTAP09496 248 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 CXCL8P10145 99 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 MATR3P43243 847 aaKnown RBP eCLIP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 ZNF131P52739 623 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 GRIN1Q05586 938 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 CUL4AQ13619 759 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 MRPL58Q14197 206 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 DHX8Q14562 1220 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 SF3A1Q15459 793 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 PABPC1LQ4VXU2 614 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 CCDC105Q8IYK2 499 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 ITFG1Q8TB96 612 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 LRRC15Q8TF66 581 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 RAD54LQ92698 747 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 FGF13Q92913 245 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 HCFC1R1Q9NWW0 138 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 DNMT3BQ9UBC3 853 aaKnown RBP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 KCNH3Q9ULD8 1083 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 CA14Q9ULX7 337 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 MYH15Q9Y2K3 1946 aa18.08■□□□□ 0.48
CCDC28B-204ENST00000469003 MYO15AQ9UKN7 3530 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 TTC26A0AVF1 554 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 ARHGEF37A1IGU5 675 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 WDR27A2RRH5 827 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 PROB1E7EW31 1015 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 FAM13AO94988 1023 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 PLCG1P19174 1290 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 MCM4P33991 863 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 LIG4P49917 911 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 MCM6Q14566 821 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 KARSQ15046 597 aaKnown RBP18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 PARM1Q6UWI2 310 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 MTSS1LQ765P7 747 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 MYCT1Q8N699 235 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 RASSF8Q8NHQ8 419 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 GPR152Q8TDT2 470 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 FGF14Q92915 247 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 PARVGQ9HBI0 331 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 TUBGCP4Q9UGJ1 667 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 TBX20Q9UMR3 447 aa18.07■□□□□ 0.48
CCDC28B-204ENST00000469003 VPS37CA5D8V6 355 aaPredicted RBP18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 K7ENM7 598 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 STK25O00506 426 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 PIGRP01833 764 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 ATF2P15336 505 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 RFX1P22670 979 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 LRPAP1P30533 357 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 ELF1P32519 619 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 KYAT1Q16773 422 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 CTXN3Q4LDR2 81 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 TCEAL8Q8IYN2 117 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 DTWD2Q8NBA8 298 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 APPL2Q8NEU8 664 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 ST13P5Q8NFI4 369 aaPredicted RBP18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 DDX12PQ92771 950 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 RPP25Q9BUL9 199 aaKnown RBP18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 CCSER1Q9C0I3 900 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 TBC1D17Q9HA65 648 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 AVENQ9NQS1 362 aaPredicted RBP18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 ARHGEF3Q9NR81 526 aa18.06■□□□□ 0.48
CCDC28B-204ENST00000469003 FBXL5Q9UKA1 691 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms