RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 CCL16O15467 120 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 MEFVO15553 781 aaPredicted RBP15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 TBC1D4O60343 1298 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 MRPL58Q14197 206 aaKnown RBP15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 KYAT1Q16773 422 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 SLC10A6Q3KNW5 377 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 VARS2Q5ST30 1063 aaKnown RBP15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 ZNF461Q8TAF7 563 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 SLC2A4RGQ9NR83 387 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 ANKFY1Q9P2R3 1169 aa15.69■□□□□ 0.1
SNRNP40-203ENST00000463988 NPHP3-ACAD11A0A0J9YXS1 232 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 H7C4K7 107 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 ABLIM3O94929 683 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 CFHP08603 1231 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 CLTAP09496 248 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 HARSP12081 509 aaKnown RBP15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 ABCD1P33897 745 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 ZNF131P52739 623 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 CUL4AQ13619 759 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 MTSS1LQ765P7 747 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 HAUS6Q7Z4H7 955 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 FGF13Q92913 245 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 C18orf25Q96B23 403 aaPredicted RBP15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 SUSD3Q96L08 255 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 TSPAN18Q96SJ8 248 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 REEP2Q9BRK0 252 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 AVENQ9NQS1 362 aaPredicted RBP15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 BLOC1S4Q9NUP1 217 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 MAFFQ9ULX9 164 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 NUB1Q9Y5A7 615 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 NUMBLQ9Y6R0 609 aa15.68■□□□□ 0.1
SNRNP40-203ENST00000463988 PTPRZ1P23471 2315 aaPredicted RBP15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 ARHGEF37A1IGU5 675 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 KRBA1A5PL33 1030 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 PI15O43692 258 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 PIGRP01833 764 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 CYP3A5P20815 502 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 PDCP20941 246 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 NTHL1P78549 312 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 ROR1Q01973 937 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 PABPC1LQ4VXU2 614 aaKnown RBP15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 TPGS2Q68CL5 300 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 PHLDB3Q6NSJ2 640 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 GPBP1Q86WP2 473 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 CCDC105Q8IYK2 499 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 TCEAL8Q8IYN2 117 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 APPL2Q8NEU8 664 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 PARVGQ9HBI0 331 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 FAM86C1Q9NVL1 165 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 DNMT3BQ9UBC3 853 aaKnown RBP15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 TBX20Q9UMR3 447 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 POLIQ9UNA4 740 aa15.67■□□□□ 0.1
SNRNP40-203ENST00000463988 TTC26A0AVF1 554 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 FAM13AO94988 1023 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 CXCL8P10145 99 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 ATF2P15336 505 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 LRPAP1P30533 357 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 ELF1P32519 619 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 NBL1P41271 181 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 CACNB1Q02641 598 aaPredicted RBP15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 SF3A1Q15459 793 aaKnown RBP15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 ZBTB6Q15916 424 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 SEZ6Q53EL9 994 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 PARM1Q6UWI2 310 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 MYCT1Q8N699 235 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 ITFG1Q8TB96 612 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 GPR152Q8TDT2 470 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 LRRC15Q8TF66 581 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 RAD54LQ92698 747 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 FGF14Q92915 247 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 BICD1Q96G01 975 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 CCSER1Q9C0I3 900 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 HAPLN2Q9GZV7 340 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 FBXL5Q9UKA1 691 aa15.66■□□□□ 0.1
SNRNP40-203ENST00000463988 USP34Q70CQ2 3546 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 WDR27A2RRH5 827 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 HNRNPDLO14979 420 aaKnown RBP15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 FAM189A1O60320 539 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 ADRB2P07550 413 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 PLCG1P19174 1290 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 MCM4P33991 863 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 MATR3P43243 847 aaKnown RBP eCLIP15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 LIG4P49917 911 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 GRIN1Q05586 938 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 KARSQ15046 597 aaKnown RBP15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 CTXN3Q4LDR2 81 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 ZNF280DQ6N043 979 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 DTWD2Q8NBA8 298 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 RASSF8Q8NHQ8 419 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 OXCT2Q9BYC2 517 aaPredicted RBP15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 TBC1D17Q9HA65 648 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 ARHGEF3Q9NR81 526 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 HCFC1R1Q9NWW0 138 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 GDE1Q9NZC3 331 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 TUBGCP4Q9UGJ1 667 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 CA14Q9ULX7 337 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 UBQLN1Q9UMX0 589 aaKnown RBP15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 PCDHB8Q9UN66 801 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 NOTCH4Q99466 2003 aa15.65■□□□□ 0.1
SNRNP40-203ENST00000463988 FAM186AA6NE01 2351 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms