RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 LXNQ9BS40 222 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 DCTN4Q9UJW0 460 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 ANAPC5Q9UJX4 755 aa13.25□□□□□ -0.29
HDAC4-208ENST00000463007 SCAF8Q9UPN6 1271 aaKnown RBP13.25□□□□□ -0.29
HDAC4-208ENST00000463007 R3HDM2Q9Y2K5 976 aaKnown RBP13.25□□□□□ -0.29
HDAC4-208ENST00000463007 SRRM3A6NNA2 597 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 PI4K2BG5E9Z4 385 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 CBX6O95503 412 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 KRT15P19012 456 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 SP4Q02446 784 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 SLMAPQ14BN4 828 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 GNPTABQ3T906 1256 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 SYCP2LQ5T4T6 812 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 CAPRIN2Q6IMN6 1127 aaKnown RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 POTEAQ6S8J7 498 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 RHOT2Q8IXI1 618 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 ZBTB10Q96DT7 871 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 HERPUD2Q9BSE4 406 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 KIAA1683Q9H0B3 1180 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 STMN4Q9H169 189 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 SLC38A10Q9HBR0 1119 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 PAPPA2Q9BXP8 1791 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 EME2A4GXA9 379 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 GOLGA8RI6L899 631 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 LGR5O75473 907 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 LYPLA2O95372 231 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 EGFRP00533 1210 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 PSMC4P43686 418 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 NPEPPSP55786 919 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 CETN1Q12798 172 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 ANKRD20A2Q5SQ80 823 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 ANKRD20A1Q5TYW2 823 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 ANKRD20A3Q5VUR7 823 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 LMO3Q8TAP4 145 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 CENPTQ96BT3 561 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 KLF6Q99612 283 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 EHMT1Q9H9B1 1298 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 KCNH7Q9NS40 1196 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 HOMER2Q9NSB8 354 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 ADAM22Q9P0K1 906 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 BHMG1C9JSJ3 638 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 WDR46O15213 610 aaKnown RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 ATP2A2P16615 1042 aaKnown RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 CD58P19256 250 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 MGAT5Q09328 741 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 EAPPQ56P03 285 aaPredicted RBP13.24□□□□□ -0.29
HDAC4-208ENST00000463007 PCNX4Q63HM2 1172 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 TEKT3Q9BXF9 490 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 MYOZ2Q9NPC6 264 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 NAALADL1Q9UQQ1 740 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 WDR90Q96KV7 1748 aa13.24□□□□□ -0.29
HDAC4-208ENST00000463007 BANF1O75531 89 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 IFNB1P01574 187 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 VAMP7P51809 220 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 SOX10P56693 466 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 RWDD2BP57060 319 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 OVGP1Q12889 678 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 LPAR1Q92633 364 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 P3H4Q92791 437 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 PPP1R12CQ9BZL4 782 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 AGO4Q9HCK5 861 aaKnown RBP13.23□□□□□ -0.29
HDAC4-208ENST00000463007 AAASQ9NRG9 546 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ARL2BPQ9Y2Y0 163 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 SLC16A4O15374 487 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ZSCAN5DPP0CG00 497 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ATF2P15336 505 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 MAPK4P31152 587 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 FOXN2P32314 431 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 RAD23BP54727 409 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 MYBPC2Q14324 1141 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ZNF365Q70YC5 407 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ECHDC2Q86YB7 292 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 IFT74Q96LB3 600 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ZNF341Q9BYN7 854 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 METTL5Q9NRN9 209 aaKnown RBP13.23□□□□□ -0.29
HDAC4-208ENST00000463007 PARP2Q9UGN5 583 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 NCANO14594 1321 aa13.23□□□□□ -0.29
HDAC4-208ENST00000463007 ENTPD5O75356 428 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 MAPTP10636 758 aaKnown RBP13.22□□□□□ -0.29
HDAC4-208ENST00000463007 MXI1P50539 228 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 PEX5P50542 639 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 PLCB3Q01970 1234 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 TKFCQ3LXA3 575 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 THEMIS2Q5TEJ8 643 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 CBWD2Q8IUF1 395 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 FMNL3Q8IVF7 1028 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 C12orf56Q8IXR9 622 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 NIM1KQ8IY84 436 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 MYLK2Q9H1R3 596 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 C10orf88Q9H8K7 445 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 VPS37BQ9H9H4 285 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 MAP3K20Q9NYL2 800 aaKnown RBP13.22□□□□□ -0.29
HDAC4-208ENST00000463007 CCPG1Q9ULG6 757 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 KIAA1217Q5T5P2 1943 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 ZNFX1Q9P2E3 1918 aaKnown RBP13.22□□□□□ -0.29
HDAC4-208ENST00000463007 NEFHP12036 1026 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 ATF7P17544 494 aaPredicted RBP13.22□□□□□ -0.29
HDAC4-208ENST00000463007 EPHB2P29323 1055 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 PEX3P56589 373 aa13.22□□□□□ -0.29
HDAC4-208ENST00000463007 DGKZQ13574 1117 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms