RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 EPHB3P54753 998 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 ITGA7Q13683 1181 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 IMMTQ16891 758 aaKnown RBP8.45□□□□□ -1.06
USP54-208ENST00000461520 DUSP28Q4G0W2 176 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 CXCL17Q6UXB2 119 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 RNF207Q6ZRF8 634 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 EEPD1Q7L9B9 569 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 TMEM199Q8N511 208 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 RGS22Q8NE09 1264 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 DNERQ8NFT8 737 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 CLEC4DQ8WXI8 215 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 ANKS1AQ92625 1134 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 KIAA1522Q9P206 1035 aaPredicted RBP8.45□□□□□ -1.06
USP54-208ENST00000461520 KLHL14Q9P2G3 628 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 CTNNA3Q9UI47 895 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 PCDHB10Q9UN67 800 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 NUDT19A8MXV4 375 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 B4DLN1 442 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 HRKO00198 91 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 NKRFO15226 690 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP54-208ENST00000461520 CBFA2T2O43439 604 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 GOLGA8HP0CJ92 632 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 ITGA4P13612 1032 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 EDNRBP24530 442 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 CALML3P27482 149 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 CPT1AP50416 773 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 MRPL12P52815 198 aaKnown RBP8.44□□□□□ -1.06
USP54-208ENST00000461520 RPS6P62753 249 aaKnown RBP8.44□□□□□ -1.06
USP54-208ENST00000461520 LAPTM5Q13571 262 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 PPP2R5DQ14738 602 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 GNPTABQ3T906 1256 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 PSRC1Q6PGN9 363 aaPredicted RBP8.44□□□□□ -1.06
USP54-208ENST00000461520 SLC30A10Q6XR72 485 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 FCRL3Q96P31 734 aaPredicted RBP8.44□□□□□ -1.06
USP54-208ENST00000461520 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP54-208ENST00000461520 WDR11Q9BZH6 1224 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 KRT23Q9C075 422 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 KAT14Q9H8E8 782 aa8.44□□□□□ -1.06
USP54-208ENST00000461520 DDX49Q9Y6V7 483 aaKnown RBP8.44□□□□□ -1.06
USP54-208ENST00000461520 LRRC37A2A6NM11 1700 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 MCM3APO60318 1980 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 B4E1Z4 1266 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 MSL3P1P0C860 447 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 CSF2RAP15509 400 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 NOP2P46087 812 aaKnown RBP8.43□□□□□ -1.06
USP54-208ENST00000461520 GIPRP48546 466 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 MVKQ03426 396 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 TCEAL1Q15170 157 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 CDC37Q16543 378 aaPredicted RBP8.43□□□□□ -1.06
USP54-208ENST00000461520 USH1GQ495M9 461 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 ASPRV1Q53RT3 343 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 BRDTQ58F21 947 aaPredicted RBP8.43□□□□□ -1.06
USP54-208ENST00000461520 TMEM240Q5SV17 173 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 TMEM63BQ5T3F8 832 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 HLA-DQA1Q5Y7H0 255 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 C16orf59Q7L2K0 433 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 ENAHQ8N8S7 591 aaPredicted RBP8.43□□□□□ -1.06
USP54-208ENST00000461520 USP38Q8NB14 1042 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 ADCY4Q8NFM4 1077 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 RASGRP4Q8TDF6 673 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 SCFD2Q8WU76 684 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 SRRTQ9BXP5 876 aaKnown RBP8.43□□□□□ -1.06
USP54-208ENST00000461520 KRTAP4-7Q9BYR0 210 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 UBA5Q9GZZ9 404 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 HIPK3Q9H422 1215 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 GRIN2DO15399 1336 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 TNKSO95271 1327 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 ABCB11O95342 1321 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 RAD50Q92878 1312 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 MUC3AQ02505 3323 aa8.43□□□□□ -1.06
USP54-208ENST00000461520 MYO9BQ13459 2157 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 A0A1W2PQ27 194 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 A0A1W2PQ64 194 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 A0A1W2PQC6 194 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 A0A1W2PQD8 194 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 A0A1W2PQH9 124 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 FGF10O15520 208 aaPredicted RBP8.42□□□□□ -1.06
USP54-208ENST00000461520 KPNA6O60684 536 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 CD3EP07766 207 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 PARP1P09874 1014 aaKnown RBP8.42□□□□□ -1.06
USP54-208ENST00000461520 SUPT20HL2P0C7V6 817 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 IFNGR1P15260 489 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 PI3P19957 117 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 PTGS1P23219 599 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 PURAQ00577 322 aaKnown RBP8.42□□□□□ -1.06
USP54-208ENST00000461520 PPP2R5BQ15173 497 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 ZNF385BQ569K4 471 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 ZNF365Q70YC5 407 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 MCF2L2Q86YR7 1114 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 JAMLQ86YT9 394 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 ADGRF4Q8IZF3 695 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 OR6J1Q8NGC5 347 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 SIGLEC10Q96LC7 697 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 SPATA32Q96LK8 384 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 UBAC1Q9BSL1 405 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 ALDH8A1Q9H2A2 487 aaPredicted RBP8.42□□□□□ -1.06
USP54-208ENST00000461520 MTIF3Q9H2K0 278 aaKnown RBP8.42□□□□□ -1.06
USP54-208ENST00000461520 CPVLQ9H3G5 476 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 TNFRSF12AQ9NP84 129 aa8.42□□□□□ -1.06
USP54-208ENST00000461520 IL23AQ9NPF7 189 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms