RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 DUOXA2Q1HG44 320 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 WDR72Q3MJ13 1102 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 FBXW10Q5XX13 1052 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 TBC1D1Q86TI0 1168 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ZNF354CQ86Y25 554 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 C4orf19Q8IY42 314 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 CHMP6Q96FZ7 201 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 CFAP57Q96MR6 1250 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 INPP4AQ96PE3 977 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 MRPL4Q9BYD3 311 aaKnown RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 FAM49AQ9H0Q0 323 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 PIK3R2O00459 728 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 CHN1P15882 459 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ATP11AP98196 1134 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 DARS2Q6PI48 645 aaKnown RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 BTNL9Q6UXG8 535 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 LRIG3Q6UXM1 1119 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ATP8B4Q8TF62 1192 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 PYROXD1Q8WU10 500 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ACSF2Q96CM8 615 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 LCMT1Q9UIC8 334 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 TRIM17Q9Y577 477 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 A0A0A6YYK5 440 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ANKRD63C9JTQ0 380 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 MCF2LO15068 1137 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 MEFVO15553 781 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 COILP38432 576 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 BACE1P56817 501 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 PSMC1P62191 440 aaKnown RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ANKRD20A3Q5VUR7 823 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 APBB1IPQ7Z5R6 666 aaPredicted RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 RNF169Q8NCN4 708 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 ATL2Q8NHH9 583 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 KLHL29Q96CT2 875 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 SNF8Q96H20 258 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 RBM41Q96IZ5 413 aaKnown RBP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.36□□□□□ -0.43
NPHP4-204ENST00000460696 SLC5A4Q9NY91 659 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 TTLL3Q9Y4R7 772 aa12.36□□□□□ -0.43
NPHP4-204ENST00000460696 PTGISQ16647 500 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 ACAD10Q6JQN1 1059 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 CYFIP2Q96F07 1278 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 OSBPL8Q9BZF1 889 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 MED7O43513 233 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 RALAP11233 206 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 GPC3P51654 580 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 NAA25Q14CX7 972 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 PPP6R3Q5H9R7 873 aaPredicted RBP12.35□□□□□ -0.43
NPHP4-204ENST00000460696 SPATA33Q96N06 139 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 PLIN4Q96Q06 1357 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 CCDC85CA6NKD9 419 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 TMEM88BA6NKF7 163 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 MAFGO15525 162 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 CAND2O75155 1236 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 CALB1P05937 261 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 INHBAP08476 426 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 FKBP1AP62942 108 aaKnown RBP12.35□□□□□ -0.43
NPHP4-204ENST00000460696 SYCP2LQ5T4T6 812 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 NOP9Q86U38 636 aaKnown RBP12.35□□□□□ -0.43
NPHP4-204ENST00000460696 MAP7D3Q8IWC1 876 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 PARD3BQ8TEW8 1205 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 RNF34Q969K3 372 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 CAPNS2Q96L46 248 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 PRMT1Q99873 361 aaKnown RBP12.35□□□□□ -0.43
NPHP4-204ENST00000460696 ZFYVE28Q9HCC9 887 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 GDF3Q9NR23 364 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 GINM1Q9NU53 330 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 PARVAQ9NVD7 372 aa12.35□□□□□ -0.43
NPHP4-204ENST00000460696 PYGMP11217 842 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 ARSEP51690 589 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 MARSP56192 900 aaKnown RBP12.34□□□□□ -0.43
NPHP4-204ENST00000460696 JAG1P78504 1218 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 C6orf163Q5TEZ5 329 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 CENPUQ71F23 418 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 SCYL3Q8IZE3 742 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 GPRASP2Q96D09 838 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 MCEEQ96PE7 176 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 SEMA4AQ9H3S1 761 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 IP6K2Q9UHH9 426 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 TJP1Q07157 1748 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 CICQ96RK0 1608 aaPredicted RBP12.34□□□□□ -0.43
NPHP4-204ENST00000460696 PRKCBP05771 671 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 TROVE2P10155 538 aaKnown RBP eCLIP12.34□□□□□ -0.43
NPHP4-204ENST00000460696 SNX16P57768 344 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 SURF1Q15526 300 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 TTMPQ5BVD1 217 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 KDM7AQ6ZMT4 941 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 PDIK1LQ8N165 341 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 SEPT1Q8WYJ6 367 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 PABPC3Q9H361 631 aaKnown RBP12.34□□□□□ -0.43
NPHP4-204ENST00000460696 HEY1Q9Y5J3 304 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 TUBGCP6Q96RT7 1819 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 C19orf81C9J6K1 198 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 EXTL3O43909 919 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 SPAG7O75391 227 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 GZMAP12544 262 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 GTF2H1P32780 548 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 MSH2P43246 934 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 MARCKSL1P49006 195 aa12.34□□□□□ -0.43
NPHP4-204ENST00000460696 LGSNQ5TDP6 509 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms