RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CCT7Q99832 543 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 TRPV6Q9H1D0 765 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CLSTN2Q9H4D0 955 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 IFT22Q9H7X7 185 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CLK4Q9HAZ1 481 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 TFCP2L1Q9NZI6 479 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HESX1Q9UBX0 185 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 EIF2B4Q9UI10 523 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 DUSP12Q9UNI6 340 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 INSRP06213 1382 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 SYNJ2BP-COX16A0A087WUM0 186 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 ZW10O43264 779 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 DLX3O60479 287 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 RNF8O76064 485 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 TGDSO95455 350 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 BCRP11274 1271 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 FGFR1P11362 822 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 ALAS1P13196 640 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 POU3F2P20265 443 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 ALAS2P22557 587 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 DNAJB1P25685 340 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 PSMA4P25789 261 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 DDIT3P35638 169 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 PMS1P54277 932 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 TGFB2P61812 414 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 HTRA3P83110 453 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 RUNX1T1Q06455 604 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 NCBP1Q09161 790 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 GRB10Q13322 594 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 MTX1Q13505 466 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 PDE3AQ14432 1141 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 RRS1Q15050 365 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 PCBP2Q15366 365 aaKnown RBP eCLIP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 ASIC2Q16515 512 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 C15orf59Q2T9L4 293 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 CCDC14Q49A88 953 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 PPM1JQ5JR12 505 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM201Q5SNT2 666 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 TEX35Q5T0J7 233 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 KDELC1Q6UW63 502 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 SPOCD1Q6ZMY3 1216 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 CYFIP1Q7L576 1253 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 OTOP3Q7RTS5 596 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 RALYLQ86SE5 291 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 CABP7Q86V35 215 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 FAM20CQ8IXL6 584 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 TRIM22Q8IYM9 498 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 ZBTB8BQ8NAP8 495 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 ARRDC4Q8NCT1 418 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 BBOF1Q8ND07 529 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 GSTCDQ8NEC7 633 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 OR8K1Q8NGG5 319 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 OR52K2Q8NGK3 314 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 NUP133Q8WUM0 1156 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 WNT5BQ9H1J7 359 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 VPS37BQ9H9H4 285 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 SEPT11Q9NVA2 429 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 GRID1Q9ULK0 1009 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 MTF2Q9Y483 593 aaPredicted RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 DGKBQ9Y6T7 804 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 FAM208AQ9UK61 1670 aaKnown RBP5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 FLT4P35916 1363 aa5.18□□□□□ -1.58
CCDC88A-209ENST00000456975 TCRBV16S1A1N1A0A5B0 115 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 E2F8A0AVK6 867 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM247A6NEH6 219 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 STX6O43752 255 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ACSL4O60488 711 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 FBXO21O94952 628 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 CRTAMO95727 393 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 NPPAP01160 153 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 CAPNS1P04632 268 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PNMA6AP0CW24 399 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TROVE2P10155 538 aaKnown RBP eCLIP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 GPTP24298 496 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP5OP48047 213 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 SLC12A2P55011 1212 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ROR2Q01974 943 aaKnown RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 DDR1Q08345 913 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 AP3B2Q13367 1082 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 GRM3Q14832 879 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ODF1Q14990 250 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 NTRK3Q16288 839 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ANKDD1AQ495B1 522 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 IQSEC1Q6DN90 963 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM53Q6P2H8 277 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TRIM46Q7Z4K8 759 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 GDAP1Q8TB36 358 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ADAM19Q9H013 955 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 KLHL25Q9H0H3 589 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 ARGLU1Q9NWB6 273 aaPredicted RBP5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 RTEL1Q9NZ71 1219 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 MOCS1Q9NZB8 636 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PDP2Q9P2J9 529 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 TJP2Q9UDY2 1190 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 GTF2IRD1Q9UHL9 959 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 MYO6Q9UM54 1294 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 PCDHA9Q9Y5H5 950 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 NCAPD2Q15021 1401 aa5.17□□□□□ -1.58
CCDC88A-209ENST00000456975 BRCA1P38398 1863 aaKnown RBP5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms