RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 TMEM161AQ9NX61 479 aa15.79■□□□□ 0.12
TNF-208ENST00000449264 DPP3Q9NY33 737 aa15.79■□□□□ 0.12
TNF-208ENST00000449264 DERAQ9Y315 318 aa15.79■□□□□ 0.12
TNF-208ENST00000449264 PCDHB7Q9Y5E2 793 aa15.79■□□□□ 0.12
TNF-208ENST00000449264 EPHB6O15197 1021 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 POMCP01189 267 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 PFKMP08237 780 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 FAM189BP81408 668 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 PPIGQ13427 754 aaKnown RBP eCLIP15.78■□□□□ 0.12
TNF-208ENST00000449264 CLLU1OSQ5K130 101 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 SCARA3Q6AZY7 606 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 GLB1LQ6UWU2 654 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.78■□□□□ 0.12
TNF-208ENST00000449264 BEST2Q8NFU1 509 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 CPLX3Q8WVH0 158 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 PDLIM2Q96JY6 352 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 GOLGA2P5Q9HBQ8 144 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 UBQLN1Q9UMX0 589 aaKnown RBP15.78■□□□□ 0.12
TNF-208ENST00000449264 COQ4Q9Y3A0 265 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 SCN1AP35498 2009 aa15.78■□□□□ 0.12
TNF-208ENST00000449264 GOLGA6L6A8MZA4 724 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 PMM2O15305 246 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 XPOTO43592 962 aaKnown RBP15.77■□□□□ 0.12
TNF-208ENST00000449264 UPP2O95045 317 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 POLR2BP30876 1174 aaKnown RBP15.77■□□□□ 0.12
TNF-208ENST00000449264 FAM43BQ6ZT52 329 aaPredicted RBP15.77■□□□□ 0.12
TNF-208ENST00000449264 OTOP2Q7RTS6 562 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 PPFIBP1Q86W92 1011 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 ABI1Q8IZP0 508 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 EHBP1Q8NDI1 1231 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 GSTCDQ8NEC7 633 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 PPP1R10Q96QC0 940 aaKnown RBP15.77■□□□□ 0.12
TNF-208ENST00000449264 IMPG2Q9BZV3 1241 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 MIOSQ9NXC5 875 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 SIX4Q9UIU6 781 aa15.77■□□□□ 0.12
TNF-208ENST00000449264 R3HCC1Q9Y3T6 440 aaKnown RBP15.77■□□□□ 0.12
TNF-208ENST00000449264 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.77■□□□□ 0.12
TNF-208ENST00000449264 ABHD14A-ACY1A0A1B0GW23 586 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 OFD1O75665 1012 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 CST3P01034 146 aaPredicted RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 GYPCP04921 128 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 PTMAP06454 111 aaKnown RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 THP07101 528 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 GATMP50440 423 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 SOX4Q06945 474 aaPredicted RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 GOLGA8FQ08AF8 430 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 GOLGA8DPQ0D2H9 430 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 SPOPLQ6IQ16 392 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 GJB7Q6PEY0 223 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 CCDC150Q8NCX0 1101 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 LMO3Q8TAP4 145 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 ELAC1Q9H777 363 aaKnown RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 SIX2Q9NPC8 291 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 ITGA11Q9UKX5 1188 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 FHOD1Q9Y613 1164 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 FNDC1Q4ZHG4 1894 aaPredicted RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 PTPRSQ13332 1948 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 ZBBXA8MT70 800 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 NOL4O94818 638 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 TPM1P09493 284 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 CASP14P31944 242 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 MYL6P60660 151 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 POLR2FP61218 127 aaKnown RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 NOP14P78316 857 aaKnown RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 TRIM14Q14142 442 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 ZBTB6Q15916 424 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 ZNF699Q32M78 642 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 WDR44Q5JSH3 913 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 KLHDC7AQ5VTJ3 777 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 CACNA2D4Q7Z3S7 1137 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 NPAS4Q8IUM7 802 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 ARHGEF19Q8IW93 802 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 URGCPQ8TCY9 931 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 NT5C1BQ96P26 610 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 LBHD1Q9BQE6 289 aaPredicted RBP15.76■□□□□ 0.11
TNF-208ENST00000449264 NUP58Q9BVL2 599 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 GANQ9H2C0 597 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 NLRC4Q9NPP4 1024 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 PLCB1Q9NQ66 1216 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 SLC38A7Q9NVC3 462 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 CACNG4Q9UBN1 327 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 APEX2Q9UBZ4 518 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 AGAP1Q9UPQ3 857 aa15.76■□□□□ 0.11
TNF-208ENST00000449264 CASTOR2A6NHX0 329 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 PPEF2O14830 753 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 AMHP03971 560 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 UCHL3P15374 230 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 KCNJ6P48051 423 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 FXR1P51114 621 aaKnown RBP eCLIP15.75■□□□□ 0.11
TNF-208ENST00000449264 WDR5P61964 334 aaKnown RBP15.75■□□□□ 0.11
TNF-208ENST00000449264 DEFB103AP81534 67 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 GRIK3Q13003 919 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 RAPGEF1Q13905 1077 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 NOMO2Q5JPE7 1267 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 ZNF365Q70YC5 407 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 C16orf59Q7L2K0 433 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 RRAGAQ7L523 313 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 TMCO2Q7Z6W1 182 aaPredicted RBP15.75■□□□□ 0.11
TNF-208ENST00000449264 PPM1KQ8N3J5 372 aa15.75■□□□□ 0.11
TNF-208ENST00000449264 TSPAN18Q96SJ8 248 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms