RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 RAVER2Q9HCJ3 691 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 AVENQ9NQS1 362 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 COL11A1P12107 1806 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 OAS1P00973 400 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 POTEJP0CG39 1038 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 IVDP26440 423 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 CNGA1P29973 690 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 MAN1A1P33908 653 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 NPTX2P47972 431 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 JAK3P52333 1124 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 TTLL12Q14166 644 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 PREPLQ4J6C6 727 aaPredicted RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 CCDC38Q502W7 563 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 PLA2G4FQ68DD2 849 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 PLCD3Q8N3E9 789 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 ATG4CQ96DT6 458 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 SNF8Q96H20 258 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 ELAC2Q9BQ52 826 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 HOMER3Q9NSC5 361 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 ANAPC7Q9UJX3 599 aa17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 TPX2Q9ULW0 747 aaKnown RBP17.49■□□□□ 0.39
CLCNKA-203ENST00000439316 MGRN1O60291 552 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 VIMP08670 466 aaKnown RBP17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 MAPK4P31152 587 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CHKAP35790 457 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 IFNAR2P48551 515 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CYP24A1Q07973 514 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 LONRF1Q17RB8 773 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 XKR9Q5GH70 373 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 SLC39A4Q6P5W5 647 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 FAM228AQ86W67 206 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 MAIP1Q8WWC4 291 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CLMNQ96JQ2 1002 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 KIFC3Q9BVG8 833 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CCDC113Q9H0I3 377 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 ELP3Q9H9T3 547 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CHST7Q9NS84 486 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 ASIC3Q9UHC3 531 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CLEC11AQ9Y240 323 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 WDR64B1ANS9 1081 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 VWA5AO00534 786 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 ACSL3O95573 720 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CCNE2O96020 404 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 UNGP13051 313 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 RDXP35241 583 aaKnown RBP17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 GCNT1Q02742 428 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 ENPEPQ07075 957 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 DMP1Q13316 513 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 SV2AQ7L0J3 742 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 ENOSF1Q7L5Y1 443 aa17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 GEMIN8Q9NWZ8 242 aaKnown RBP17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 CTDP1Q9Y5B0 961 aaPredicted RBP17.48■□□□□ 0.39
CLCNKA-203ENST00000439316 MROH7Q68CQ1 1323 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 DENND3A2RUS2 1198 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 SNX3O60493 162 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 ZBED4O75132 1171 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 ATP5DP30049 168 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 SFNP31947 248 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 SLC1A1P43005 524 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 SNX1Q13596 522 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 WLSQ5T9L3 541 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 VSTM1Q6UX27 236 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 TRPM8Q7Z2W7 1104 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 USP37Q86T82 979 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 ANKRD13AQ8IZ07 590 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 MCOLN2Q8IZK6 566 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 GRK7Q8WTQ7 553 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 SPIRE2Q8WWL2 714 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 ARHGEF2Q92974 986 aaKnown RBP17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 FAM81BQ96LP2 452 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 HERPUD2Q9BSE4 406 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 DCLK3Q9C098 648 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 HOMER2Q9NSB8 354 aa17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 MAP3K20Q9NYL2 800 aaKnown RBP17.47■□□□□ 0.39
CLCNKA-203ENST00000439316 SORBS3O60504 671 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 ZC3H11AO75152 810 aaKnown RBP eCLIP17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 TTC4O95801 387 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 MYBL1P10243 752 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 KRT5P13647 590 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 EIF2AK2P19525 551 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 ELF3P78545 371 aaPredicted RBP17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 KRT76Q01546 638 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 CAV1Q03135 178 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 PGM5Q15124 567 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 LLGL1Q15334 1064 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 SH3D19Q5HYK7 790 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 CATSPERGQ6ZRH7 1159 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 ATG4AQ8WYN0 398 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 BSNDQ8WZ55 320 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 TRIM11Q96F44 468 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 DDX27Q96GQ7 796 aaKnown RBP17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 MYCBPQ99417 103 aaPredicted RBP17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 TMEM120BA0PK00 339 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 ATP9AO75110 1047 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 TCEA3O75764 348 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 DSG3P32926 999 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 ITGA8P53708 1063 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 PTP4A2Q12974 167 aa17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 MKRN4PQ13434 485 aaPredicted RBP17.46■□□□□ 0.39
CLCNKA-203ENST00000439316 SAMD3Q8N6K7 520 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms