RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 ZBTB6Q15916 424 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 PTPN21Q16825 1174 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 TRIM65Q6PJ69 517 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 ABI1Q8IZP0 508 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 C1orf127Q8N9H9 656 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 EHBP1Q8NDI1 1231 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 FAM84AQ96KN4 292 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 PPP1R10Q96QC0 940 aaKnown RBP22.33■■□□□ 1.17
CHD3-204ENST00000439235 LBHD1Q9BQE6 289 aaPredicted RBP22.33■■□□□ 1.17
CHD3-204ENST00000439235 DPP3Q9NY33 737 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 ZMYND8Q9ULU4 1186 aaPredicted RBP22.33■■□□□ 1.17
CHD3-204ENST00000439235 DAAM1Q9Y4D1 1078 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 NR2E3Q9Y5X4 410 aa22.33■■□□□ 1.17
CHD3-204ENST00000439235 ANK1P16157 1881 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 LTBP2Q14767 1821 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 ZC3H11AO75152 810 aaKnown RBP eCLIP22.32■■□□□ 1.16
CHD3-204ENST00000439235 OFD1O75665 1012 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 VNN1O95497 513 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 ACRP10323 421 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 SYN1P17600 705 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 TRIM21P19474 475 aaKnown RBP22.32■■□□□ 1.16
CHD3-204ENST00000439235 SLC9A1P19634 815 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 SCNN1GP51170 649 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 FIGNQ5HY92 759 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 WDR44Q5JSH3 913 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 HELQQ8TDG4 1101 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 CXCL16Q9H2A7 254 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 FAM207AQ9NSI2 230 aaPredicted RBP22.32■■□□□ 1.16
CHD3-204ENST00000439235 IMPACTQ9P2X3 320 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 TUBGCP4Q9UGJ1 667 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 INPP5FQ9Y2H2 1132 aa22.32■■□□□ 1.16
CHD3-204ENST00000439235 CITO14578 2027 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 FGBP02675 491 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 ITGB3P05106 788 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 KRT19P08727 400 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 FGFR1P11362 822 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 RFX1P22670 979 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 KCNJ6P48051 423 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 KLK7P49862 253 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 RBP5P82980 135 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 NOMO2Q5JPE7 1267 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 CLLU1OSQ5K130 101 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.31■■□□□ 1.16
CHD3-204ENST00000439235 PPFIBP1Q86W92 1011 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 GSTCDQ8NEC7 633 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 LMO3Q8TAP4 145 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 C18orf25Q96B23 403 aaPredicted RBP22.31■■□□□ 1.16
CHD3-204ENST00000439235 PDLIM2Q96JY6 352 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 KANSL3Q9P2N6 904 aa22.31■■□□□ 1.16
CHD3-204ENST00000439235 CLSTN1O94985 981 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 ATICP31939 592 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 WDR5P61964 334 aaKnown RBP22.3■■□□□ 1.16
CHD3-204ENST00000439235 SPC24Q8NBT2 197 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 TAF4BQ92750 862 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 SEMA4DQ92854 862 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 NT5C1BQ96P26 610 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 RNF19AQ9NV58 838 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 SIX4Q9UIU6 781 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 PLAGL2Q9UPG8 496 aa22.3■■□□□ 1.16
CHD3-204ENST00000439235 LRPAP1P30533 357 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 POLR2BP30876 1174 aaKnown RBP22.29■■□□□ 1.16
CHD3-204ENST00000439235 GUCY2FP51841 1108 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 SGSM1Q2NKQ1 1148 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 ZNF699Q32M78 642 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 KLHDC7AQ5VTJ3 777 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 CRIPAKQ8N1N5 446 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 LRRC52Q8N7C0 313 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 FAM81BQ96LP2 452 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 MRPL9Q9BYD2 267 aaKnown RBP22.29■■□□□ 1.16
CHD3-204ENST00000439235 EDEM3Q9BZQ6 932 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 GANQ9H2C0 597 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 SIX2Q9NPC8 291 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 MIOSQ9NXC5 875 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 APEX2Q9UBZ4 518 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 FBXL5Q9UKA1 691 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 AGAP1Q9UPQ3 857 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 MICAL3Q7RTP6 2002 aa22.29■■□□□ 1.16
CHD3-204ENST00000439235 DNAH12Q6ZR08 3092 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 A0A1W2PQJ5 194 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 ASS1P00966 412 aaKnown RBP22.28■■□□□ 1.16
CHD3-204ENST00000439235 POMCP01189 267 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 AFF1P51825 1210 aaKnown RBP22.28■■□□□ 1.16
CHD3-204ENST00000439235 MYL6P60660 151 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 NOP14P78316 857 aaKnown RBP22.28■■□□□ 1.16
CHD3-204ENST00000439235 ZNF365Q70YC5 407 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 OTOP2Q7RTS6 562 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 CACNA2D4Q7Z3S7 1137 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 CXorf38Q8TB03 319 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 ZNF560Q96MR9 790 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 UROC1Q96N76 676 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 MTIF3Q9H2K0 278 aaKnown RBP22.28■■□□□ 1.16
CHD3-204ENST00000439235 CEP72Q9P209 647 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 TET1Q8NFU7 2136 aa22.28■■□□□ 1.16
CHD3-204ENST00000439235 ZBBXA8MT70 800 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 STAU1O95793 577 aaKnown RBP22.27■■□□□ 1.16
CHD3-204ENST00000439235 CST3P01034 146 aaPredicted RBP22.27■■□□□ 1.16
CHD3-204ENST00000439235 GYPCP04921 128 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 UCHL3P15374 230 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 PNPLA4P41247 253 aa22.27■■□□□ 1.16
CHD3-204ENST00000439235 SOX4Q06945 474 aaPredicted RBP22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 181.2 ms