RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 CCL15Q16663 113 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 CCDC137Q6PK04 289 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PATL1Q86TB9 770 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 NUDCD3Q8IVD9 361 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PARD6BQ9BYG5 372 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 CASP8Q14790 479 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 STRIP1Q5VSL9 837 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 RUBCNLQ9H714 662 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 BFARQ9NZS9 450 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 NALCNQ8IZF0 1738 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 CCDC188H7C350 402 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 IGKV5-2P06315 115 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 AKR1B1P15121 316 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 CDH18Q13634 790 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 IL31Q6EBC2 164 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 STAG2Q8N3U4 1231 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 C1orf54Q8WWF1 131 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 BPIFA3Q9BQP9 254 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PXDNLA1KZ92 1463 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 HARS2P49590 506 aaKnown RBP12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 RCAN1P53805 252 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 PRKCQQ04759 706 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 ARHGAP15Q53QZ3 475 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 NUP93Q8N1F7 819 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 SNX24Q9Y343 169 aa12.69□□□□□ -0.38
CCDC88A-207ENST00000436346 KNL1Q8NG31 2342 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 ANGPT2O15123 496 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 ZNF189O75820 626 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 GGPS1O95749 300 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 CETPP11597 493 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 PRKCEQ02156 737 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 SNRNP35Q16560 246 aaKnown RBP12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 SLC7A14Q8TBB6 771 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 FGFR4P22455 802 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 C11orf96Q7Z7L8 435 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 SENP7Q9BQF6 1050 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 H0Y3Z8 333 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 STXBP3O00186 592 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 THPOP40225 353 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 CYP4F11Q9HBI6 524 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 RGL1Q9NZL6 768 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 HDAC6Q9UBN7 1215 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 AXIN2Q9Y2T1 843 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 RBP5P82980 135 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 C10orf120Q5SQS8 335 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 TRIM48Q8IWZ4 208 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 FAM49BQ9NUQ9 324 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 PYGBP11216 843 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 DMC1Q14565 340 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 KIZQ2M2Z5 673 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 FRMD5Q7Z6J6 570 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 DNAJC7Q99615 494 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 NCK2O43639 380 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 ARMC6Q6NXE6 501 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 RRM2BQ7LG56 351 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 HAUS6Q7Z4H7 955 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 SLC30A5Q8TAD4 765 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 ARL8AQ96BM9 186 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 AGAP3Q96P47 875 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 AAASQ9NRG9 546 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 RPS6KA5O75582 802 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 KRT17Q04695 432 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 NECTIN1Q15223 517 aa12.68□□□□□ -0.38
CCDC88A-207ENST00000436346 RNF180Q86T96 592 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 DHX40Q8IX18 779 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ABI2Q9NYB9 513 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ERAP1Q9NZ08 941 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 PKP3Q9Y446 797 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 LRG1P02750 347 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ITGA4P13612 1032 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 KRT72Q14CN4 511 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 OR9Q1Q8NGQ5 310 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 PTPRN2Q92932 1015 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 C18orf8Q96DM3 657 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ELMO2Q96JJ3 720 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ZFP42Q96MM3 310 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 KRT14P02533 472 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 FDX1P10109 184 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 TYK2P29597 1187 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 RGS7P49802 495 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 HPCAP84074 193 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 APOL5Q9BWW9 433 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 EHD2Q9NZN4 543 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 SNX9Q9Y5X1 595 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 IGSF9BQ9UPX0 1349 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ATP9BO43861 1147 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 NDUFS3O75489 264 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ODC1P11926 461 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 HMOX2P30519 316 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 PDXDC1Q6P996 788 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ICA1LQ8NDH6 482 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 GRID2IPA4D2P6 1211 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 SLC16A3O15427 465 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ETFBP38117 255 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 BTN2A2Q8WVV5 523 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 C6orf203Q9P0P8 240 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 RP1P56715 2156 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 GGCXP38435 758 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 BLVRAP53004 296 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 AP2B1P63010 937 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms