RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 PCSK1P29120 753 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 ARL4AP40617 200 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 MESDQ14696 234 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 CTXN3Q4LDR2 81 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 NT5DC1Q5TFE4 455 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 CCDC63Q8NA47 563 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 IQCGQ9H095 443 aaKnown RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 RBPJLQ9UBG7 517 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 SNX12Q9UMY4 172 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 SH3BP1Q9Y3L3 701 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 FARP1Q9Y4F1 1045 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 TRPV2Q9Y5S1 764 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 M0QYV0 167 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 KIF1CO43896 1103 aaKnown RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 ARL13BQ3SXY8 428 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 ARHGAP15Q53QZ3 475 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 DDX53Q86TM3 631 aaKnown RBP11.31□□□□□ -0.6
TCOF1-204ENST00000427724 MS4A14Q96JA4 679 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 RAB20Q9NX57 234 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 EHD2Q9NZN4 543 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 DPP7Q9UHL4 492 aa11.31□□□□□ -0.6
TCOF1-204ENST00000427724 LRRIQ3A6PVS8 624 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 PIK3R2O00459 728 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 MYL4P12829 197 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 NR1D1P20393 614 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 ADCY1Q08828 1119 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 CCDC85BQ15834 202 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 UAP1Q16222 522 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 PPP6R3Q5H9R7 873 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 ARNTL2Q8WYA1 636 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 MAML3Q96JK9 1138 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 RANBP17Q9H2T7 1088 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 C11orf49Q9H6J7 331 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 FAM49BQ9NUQ9 324 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 TYW1Q9NV66 732 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 RP1L1Q8IWN7 2480 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 PVALEFA0A1B0GWK0 134 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 EIF4E1BA6NMX2 242 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 DUSP11O75319 330 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 PMS1P54277 932 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 MTMR3Q13615 1198 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 CELF3Q5SZQ8 465 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 ALKBH5Q6P6C2 394 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 NOP9Q86U38 636 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 SH2D3CQ8N5H7 860 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 HNRNPLLQ8WVV9 542 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 SLITRK1Q96PX8 696 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 UNC93B1Q9H1C4 597 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 FAM237AA0A1B0GTK4 181 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 H7C0C1 242 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 SLC10A3P09131 477 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 ATP5OP48047 213 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 IRAK1P51617 712 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 ATP11AP98196 1134 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 MKRN4PQ13434 485 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 PKN2Q16513 984 aaKnown RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 DUSP28Q4G0W2 176 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 FAM171A1Q5VUB5 890 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 KRT39Q6A163 491 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 PALB2Q86YC2 1186 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 MGARPQ8TDB4 240 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 SYNDIG1Q9H7V2 258 aa11.3□□□□□ -0.6
TCOF1-204ENST00000427724 TIMM13Q9Y5L4 95 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-204ENST00000427724 GNRH1P01148 92 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 SMIM10L2AP0DMW4 78 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 SMIM10L2BP0DMW5 78 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 CD52P31358 61 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 KCNH2Q12809 1159 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 PPIGQ13427 754 aaKnown RBP eCLIP11.29□□□□□ -0.62e-7■■□□□ 13.8
TCOF1-204ENST00000427724 CCDC89Q8N998 374 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 MRPS31Q92665 395 aaKnown RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 FAM81BQ96LP2 452 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 STMN4Q9H169 189 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 CD248Q9HCU0 757 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 ATP8A1Q9Y2Q0 1164 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 ZNF142P52746 1687 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 IGSF9BQ9UPX0 1349 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 ALS2CLQ60I27 953 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 FBXO46Q6PJ61 603 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 CCNI2Q6ZMN8 369 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 GUF1Q8N442 669 aaKnown RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 RAB17Q9H0T7 212 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 RNPEPQ9H4A4 650 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 HPCAL4Q9UM19 191 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 UBQLN1Q9UMX0 589 aaKnown RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 USP20Q9Y2K6 914 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 NRCAMQ92823 1304 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 MYMKA6NI61 221 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 PGRMC1O00264 195 aaKnown RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 APOEP02649 317 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 LCP1P13796 627 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 NME3Q13232 169 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 RBBP5Q15291 538 aaKnown RBP11.29□□□□□ -0.6
TCOF1-204ENST00000427724 DENND2CQ68D51 928 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 PPP4R3CPQ6ZMV5 832 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 TMEM35BQ8NCS4 154 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 GAD1Q99259 594 aa11.29□□□□□ -0.6
TCOF1-204ENST00000427724 KLC4Q9NSK0 619 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms