RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 ZNF689Q96CS4 500 aaPredicted RBP16.91■□□□□ 0.3
SHOX2-202ENST00000425436 CASD1Q96PB1 797 aa16.91■□□□□ 0.3
SHOX2-202ENST00000425436 GAD1Q99259 594 aa16.91■□□□□ 0.3
SHOX2-202ENST00000425436 CBWD1Q9BRT8 395 aa16.91■□□□□ 0.3
SHOX2-202ENST00000425436 MKNK1Q9BUB5 465 aa16.91■□□□□ 0.3
SHOX2-202ENST00000425436 GBP3Q9H0R5 595 aa16.91■□□□□ 0.3
SHOX2-202ENST00000425436 ARMCX3Q9UH62 379 aaPredicted RBP16.91■□□□□ 0.3
SHOX2-202ENST00000425436 STYXL1Q9Y6J8 313 aa16.91■□□□□ 0.3
SHOX2-202ENST00000425436 TRIP11Q15643 1979 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 CHD9Q3L8U1 2897 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 SOX1O00570 391 aaPredicted RBP16.9■□□□□ 0.3
SHOX2-202ENST00000425436 CYLC1P35663 651 aaPredicted RBP16.9■□□□□ 0.3
SHOX2-202ENST00000425436 TNFSF9P41273 254 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 ACOT2P49753 483 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 RAD9BQ6WBX8 426 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 HACE1Q8IYU2 909 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 ABI1Q8IZP0 508 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 SAAL1Q96ER3 474 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 ZFP42Q96MM3 310 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 RSAD1Q9HA92 442 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 MIOSQ9NXC5 875 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 HCSTQ9UBK5 93 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 AGO2Q9UKV8 859 aaKnown RBP16.9■□□□□ 0.3
SHOX2-202ENST00000425436 PCDHA11Q9Y5I1 949 aa16.9■□□□□ 0.3
SHOX2-202ENST00000425436 EPN1Q9Y6I3 576 aaPredicted RBP16.9■□□□□ 0.3
SHOX2-202ENST00000425436 COL4A6Q14031 1691 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 GOLGA8IPA6NC78 632 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 ARL5CA6NH57 179 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 GOLGA8JA6NMD2 632 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 TULP1O00294 542 aaPredicted RBP16.89■□□□□ 0.29
SHOX2-202ENST00000425436 RECQL4O94761 1208 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 ARHGEF15O94989 841 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 IPO7O95373 1038 aaKnown RBP16.89■□□□□ 0.29
SHOX2-202ENST00000425436 NR3C1P04150 777 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 CA3P07451 260 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 MLH1P40692 756 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 GRM5P41594 1212 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 BTG3Q14201 252 aaPredicted RBP16.89■□□□□ 0.29
SHOX2-202ENST00000425436 GLB1LQ6UWU2 654 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 ACAP3Q96P50 834 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 CCDC94Q9BW85 323 aaPredicted RBP16.89■□□□□ 0.29
SHOX2-202ENST00000425436 NKX2-4Q9H2Z4 354 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 MMRN2Q9H8L6 949 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 RC3H2Q9HBD1 1191 aaKnown RBP16.89■□□□□ 0.29
SHOX2-202ENST00000425436 AGPAT3Q9NRZ7 376 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 MYO1AQ9UBC5 1043 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 MSRAQ9UJ68 235 aa16.89■□□□□ 0.29
SHOX2-202ENST00000425436 RNF225M0QZC1 329 aaPredicted RBP16.88■□□□□ 0.29
SHOX2-202ENST00000425436 RIOK3O14730 519 aaKnown RBP16.88■□□□□ 0.29
SHOX2-202ENST00000425436 OGTO15294 1046 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 HOXA2O43364 376 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 FAM189A1O60320 539 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 POMCP01189 267 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 PSMC2P35998 433 aaKnown RBP16.88■□□□□ 0.29
SHOX2-202ENST00000425436 SMAD3P84022 425 aaKnown RBP16.88■□□□□ 0.29
SHOX2-202ENST00000425436 TRIM65Q6PJ69 517 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 ZNF662Q6ZS27 426 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 SLC9A9Q8IVB4 645 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 SYN2Q92777 582 aaPredicted RBP16.88■□□□□ 0.29
SHOX2-202ENST00000425436 LRCH3Q96II8 777 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 FAM213AQ9BRX8 229 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 TMEM117Q9H0C3 514 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 UBN1Q9NPG3 1134 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 PLAGL2Q9UPG8 496 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 GIT1Q9Y2X7 761 aa16.88■□□□□ 0.29
SHOX2-202ENST00000425436 CHD7Q9P2D1 2997 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 MEFVO15553 781 aaPredicted RBP16.87■□□□□ 0.29
SHOX2-202ENST00000425436 KIF5CO60282 957 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 NDUFA10O95299 355 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 AFPP02771 609 aaKnown RBP16.87■□□□□ 0.29
SHOX2-202ENST00000425436 GARTP22102 1010 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 DNAJB2P25686 324 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 RAB30Q15771 203 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 NOMO2Q5JPE7 1267 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 HABP4Q5JVS0 413 aaKnown RBP16.87■□□□□ 0.29
SHOX2-202ENST00000425436 SYT10Q6XYQ8 523 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 SPRED2Q7Z698 418 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 TXLNBQ8N3L3 684 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 GSTCDQ8NEC7 633 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 FRMD4BQ9Y2L6 1034 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 CITO14578 2027 aa16.87■□□□□ 0.29
SHOX2-202ENST00000425436 GTPBP10A4D1E9 387 aaKnown RBP16.86■□□□□ 0.29
SHOX2-202ENST00000425436 LINC01553A4QN01 128 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CLTAP09496 248 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CXCL8P10145 99 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CASQ1P31415 396 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 SCNN1GP51170 649 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CYP2J2P51589 502 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 YARSP54577 528 aaKnown RBP16.86■□□□□ 0.29
SHOX2-202ENST00000425436 KCNH2Q12809 1159 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 TUBB2AQ13885 445 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 SLC10A6Q3KNW5 377 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 ARHGAP29Q52LW3 1261 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CRELD2Q6UXH1 353 aaPredicted RBP16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CACNA2D4Q7Z3S7 1137 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 CMTR2Q8IYT2 770 aaKnown RBP16.86■□□□□ 0.29
SHOX2-202ENST00000425436 FIBCD1Q8N539 461 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 RDH13Q8NBN7 331 aa16.86■□□□□ 0.29
SHOX2-202ENST00000425436 SP7Q8TDD2 431 aaPredicted RBP16.86■□□□□ 0.29
SHOX2-202ENST00000425436 TIFAQ96CG3 184 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms