RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 FMR1Q06787 632 aaKnown RBP eCLIP18.22■□□□□ 0.515e-9■■■■■ 37.3
PHRF1-202ENST00000413872 BFSP2Q13515 415 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 NAB2Q15742 525 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 ACAD11Q709F0 780 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 OR1G1P47890 313 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 Q4G0T1 1027 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 TTC30AQ86WT1 665 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 MAML1Q92585 1016 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 HPDLQ96IR7 371 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 SLITRK1Q96PX8 696 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 PITPNM3Q9BZ71 974 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 TGFB3P10600 412 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 ESRRAP11474 423 aaPredicted RBP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 NBPF9Q3BBW0 867 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 NBPF12Q5TAG4 269 aaPredicted RBP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 NUGGCQ68CJ6 796 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 PDZD8Q8NEN9 1154 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 FAM163AQ96GL9 167 aaPredicted RBP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 UPF3AQ9H1J1 476 aaKnown RBP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 RIOX1Q9H6W3 641 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 DDTLA6NHG4 134 aaPredicted RBP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 NCK2O43639 380 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 UPP2O95045 317 aa18.22■□□□□ 0.51
PHRF1-202ENST00000413872 NSUN2Q08J23 767 aaKnown RBP eCLIP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 EPM2AIP1Q7L775 607 aaPredicted RBP18.22■□□□□ 0.51
PHRF1-202ENST00000413872 GOLGA8MH3BSY2 632 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 NR1I3Q14994 352 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 SEC23AQ15436 765 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 CDC26Q8NHZ8 85 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 CCDC124Q96CT7 223 aaKnown RBP18.21■□□□□ 0.51
PHRF1-202ENST00000413872 ACTR5Q9H9F9 607 aaPredicted RBP18.21■□□□□ 0.51
PHRF1-202ENST00000413872 STRNO43815 780 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 TFRCP02786 760 aaKnown RBP18.21■□□□□ 0.51
PHRF1-202ENST00000413872 PDGFRBP09619 1106 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 MMS22LQ6ZRQ5 1243 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 USP49Q70CQ1 688 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 TRIM15Q9C019 465 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 SYNPO2Q9UMS6 1093 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 SMAPO00193 183 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 ODC1P11926 461 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 GNL1P36915 607 aaPredicted RBP18.21■□□□□ 0.51
PHRF1-202ENST00000413872 DEUP1Q05D60 604 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 GBP5Q96PP8 586 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 IDI2Q9BXS1 227 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 TRPC7Q9HCX4 862 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 KIAA1257Q9ULG3 409 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 APOBEC2Q9Y235 224 aaKnown RBP18.21■□□□□ 0.51
PHRF1-202ENST00000413872 RGS7P49802 495 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 ARSEP51690 589 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 MTHFD1LQ6UB35 978 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 RAB42Q8N4Z0 105 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 RAPGEF5Q92565 580 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 AGPAT3Q9NRZ7 376 aa18.21■□□□□ 0.51
PHRF1-202ENST00000413872 OLA1Q9NTK5 396 aaKnown RBP18.21■□□□□ 0.51
PHRF1-202ENST00000413872 ZBED8Q8IZ13 594 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 PPHLN1Q8NEY8 458 aaKnown RBP18.2■□□□□ 0.5
PHRF1-202ENST00000413872 FBXO41Q8TF61 875 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 CATSPERBQ9H7T0 1116 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SENP1Q9P0U3 644 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 GARTP22102 1010 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 RASSF3Q86WH2 238 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 ATPAF2Q8N5M1 289 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SLC35G2Q8TBE7 412 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 TRIM33Q9UPN9 1127 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 TARSL2A2RTX5 802 aaKnown RBP18.2■□□□□ 0.5
PHRF1-202ENST00000413872 MTSS1O43312 755 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SLC37A4O43826 429 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 TMEM253P0C7T8 217 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 GTF2H1P32780 548 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 ALDH1A3P47895 512 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 ZC3H18Q86VM9 953 aaKnown RBP18.2■□□□□ 0.5
PHRF1-202ENST00000413872 FHOD1Q9Y613 1164 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 KIF20BQ96Q89 1820 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 FAM200BP0CF97 657 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 DSG3P32926 999 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 CPA5Q8WXQ8 436 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SNX19Q92543 992 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 OPTNQ96CV9 577 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 PDLIM2Q96JY6 352 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SEPT5Q99719 369 aaPredicted RBP18.2■□□□□ 0.5
PHRF1-202ENST00000413872 FOXP3Q9BZS1 431 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SPATC1LQ9H0A9 340 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 PXMP2Q9NR77 195 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 SNX12Q9UMY4 172 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 TAF6LQ9Y6J9 622 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 PXDNQ92626 1479 aa18.2■□□□□ 0.5
PHRF1-202ENST00000413872 TTC36A6NLP5 189 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 THPOP40225 353 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 LIG3P49916 1009 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 CASP7P55210 303 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 CACNB2Q08289 660 aaPredicted RBP18.19■□□□□ 0.5
PHRF1-202ENST00000413872 HIF1AQ16665 826 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 KIF19Q2TAC6 998 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 MGAT5BQ3V5L5 792 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 C4orf22Q6V702 233 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 PACSIN2Q9UNF0 486 aaPredicted RBP18.19■□□□□ 0.5
PHRF1-202ENST00000413872 H7C4K7 107 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 ZNF197O14709 1029 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 MMEP08473 750 aa18.19■□□□□ 0.5
PHRF1-202ENST00000413872 DDX5P17844 614 aaKnown RBP18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms