RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 EHBP1Q8NDI1 1231 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 TAS1R2Q8TE23 839 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 ERGIC2Q96RQ1 377 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 MTIF3Q9H2K0 278 aaKnown RBP19.5■□□□□ 0.71
SDC1-203ENST00000403076 KANSL3Q9P2N6 904 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 TUBGCP4Q9UGJ1 667 aa19.5■□□□□ 0.71
SDC1-203ENST00000403076 TRIP11Q15643 1979 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 ANK1P16157 1881 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 A0A1W2PQC6 194 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 PMM2O15305 246 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 CYP3A5P20815 502 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 GATMP50440 423 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 GRIK3Q13003 919 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 ZBTB6Q15916 424 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 WDR44Q5JSH3 913 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 C1orf127Q8N9H9 656 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 CCDC150Q8NCX0 1101 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 GSTCDQ8NEC7 633 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 TOP1MTQ969P6 601 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 PPP1R10Q96QC0 940 aaKnown RBP19.49■□□□□ 0.71
SDC1-203ENST00000403076 LSM14BQ9BX40 385 aaKnown RBP19.49■□□□□ 0.71
SDC1-203ENST00000403076 IMPG2Q9BZV3 1241 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.49■□□□□ 0.71
SDC1-203ENST00000403076 RAB20Q9NX57 234 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 ITGA11Q9UKX5 1188 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 PLAGL2Q9UPG8 496 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 AGAP1Q9UPQ3 857 aa19.49■□□□□ 0.71
SDC1-203ENST00000403076 RALGAPA2Q2PPJ7 1873 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 TBKBP1A7MCY6 615 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 ITGB3P05106 788 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 SLC9A1P19634 815 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 POLR2BP30876 1174 aaKnown RBP19.48■□□□□ 0.71
SDC1-203ENST00000403076 RBP5P82980 135 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 KCNMA1Q12791 1236 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 NCOA4Q13772 614 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 EPC2Q52LR7 807 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 VSTM4Q8IW00 320 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 FAM193BQ96PV7 902 aaPredicted RBP19.48■□□□□ 0.71
SDC1-203ENST00000403076 INTS2Q9H0H0 1204 aaKnown RBP19.48■□□□□ 0.71
SDC1-203ENST00000403076 COQ4Q9Y3A0 265 aa19.48■□□□□ 0.71
SDC1-203ENST00000403076 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.48■□□□□ 0.71
SDC1-203ENST00000403076 LTBP2Q14767 1821 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 INPPL1O15357 1258 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 VNN1O95497 513 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 CST3P01034 146 aaPredicted RBP19.47■□□□□ 0.71
SDC1-203ENST00000403076 PON1P27169 355 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 MAGEA10P43363 369 aaPredicted RBP19.47■□□□□ 0.71
SDC1-203ENST00000403076 KLK7P49862 253 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 LRMPQ12912 555 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 TMC6Q7Z403 805 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 CRIPAKQ8N1N5 446 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 TMEM130Q8N3G9 435 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 NEK11Q8NG66 645 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 HERVK_113Q902F9 699 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 SEMA4DQ92854 862 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 CASD1Q96PB1 797 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 GOLGA2P5Q9HBQ8 144 aa19.47■□□□□ 0.71
SDC1-203ENST00000403076 MYL6P60660 151 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 SOX4Q06945 474 aaPredicted RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 PAN2Q504Q3 1202 aaKnown RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 TMCO2Q7Z6W1 182 aaPredicted RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 PI4K2AQ9BTU6 479 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 MRPL9Q9BYD2 267 aaKnown RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 FAM207AQ9NSI2 230 aaPredicted RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 TBC1D13Q9NVG8 400 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 SIX4Q9UIU6 781 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 SIK3Q9Y2K2 1263 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 SLC4A7Q9Y6M7 1214 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 CASTOR2A6NHX0 329 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 CAPN15O75808 1086 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 TRIM21P19474 475 aaKnown RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 CDC25BP30305 580 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 PBX1P40424 430 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 TUSC3Q13454 348 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 SGSM1Q2NKQ1 1148 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 SPECC1LQ69YQ0 1117 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 TRIM65Q6PJ69 517 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 SPC24Q8NBT2 197 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 RSPH1Q8WYR4 309 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 NT5C1BQ96P26 610 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 ZBED2Q9BTP6 218 aa19.46■□□□□ 0.71
SDC1-203ENST00000403076 CXXC1Q9P0U4 656 aaPredicted RBP19.46■□□□□ 0.71
SDC1-203ENST00000403076 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.46■□□□□ 0.71
SDC1-203ENST00000403076 LRRN2O75325 713 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 DGKIO75912 1065 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 MYO1EQ12965 1108 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 NAB2Q15742 525 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 ZNF699Q32M78 642 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 C9orf57Q5W0N0 161 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 LMO3Q8TAP4 145 aa19.45■□□□□ 0.7
SDC1-203ENST00000403076 LRPAP1P30533 357 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 ATICP31939 592 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 RPL9P32969 192 aaKnown RBP19.44■□□□□ 0.7
SDC1-203ENST00000403076 APBA1Q02410 837 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 SCARA3Q6AZY7 606 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 PPFIBP1Q86W92 1011 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 ZNF280BQ86YH2 543 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 TAF4BQ92750 862 aa19.44■□□□□ 0.7
SDC1-203ENST00000403076 ELMO3Q96BJ8 720 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms