RNA–Protein interactions for RNA: ENST00000397200.8

CAPN3-207, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-207ENST00000397200 SERPING1P05155 500 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 STAG3L1P0CL83 205 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 GRM5P41594 1212 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 ZBTB41Q5SVQ8 909 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 CNKSR3Q6P9H4 555 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 CEP120Q8N960 986 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 CCDC94Q9BW85 323 aaPredicted RBP16.08■□□□□ 0.17
CAPN3-207ENST00000397200 TRAIPQ9BWF2 469 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 RGS18Q9NS28 235 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 CPSF3Q9UKF6 684 aaKnown RBP16.08■□□□□ 0.17
CAPN3-207ENST00000397200 IPPQ9Y573 584 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 PCDHB2Q9Y5E7 798 aa16.08■□□□□ 0.17
CAPN3-207ENST00000397200 CITO14578 2027 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 PFKMP08237 780 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 CLTAP09496 248 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 SKIP12755 728 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 KRT13P13646 458 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 TNFSF9P41273 254 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 POLR2FP61218 127 aaKnown RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 PPIGQ13427 754 aaKnown RBP eCLIP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 SPA17Q15506 151 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 WHAMMP3Q1A5X7 153 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 SFMBT2Q5VUG0 894 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 CRELD2Q6UXH1 353 aaPredicted RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 INTS8Q75QN2 995 aaKnown RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 HACE1Q8IYU2 909 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 UBXN4Q92575 508 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 BADQ92934 168 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 ACAP3Q96P50 834 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 TSPYL2Q9H2G4 693 aaPredicted RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 NXF3Q9H4D5 531 aaKnown RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 RPF1Q9H9Y2 349 aaKnown RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 C1orf112Q9NSG2 853 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 SNTG2Q9NY99 539 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 RBAKQ9NYW8 714 aaPredicted RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 ZMYND8Q9ULU4 1186 aaPredicted RBP16.08■□□□□ 0.16
CAPN3-207ENST00000397200 GUCA1BQ9UMX6 200 aa16.08■□□□□ 0.16
CAPN3-207ENST00000397200 MICAL3Q7RTP6 2002 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 ANO9A1A5B4 782 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 TULP1O00294 542 aaPredicted RBP16.07■□□□□ 0.16
CAPN3-207ENST00000397200 ADRB2P07550 413 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 SYN1P17600 705 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 PON1P27169 355 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 YARSP54577 528 aaKnown RBP16.07■□□□□ 0.16
CAPN3-207ENST00000397200 MCCD1P59942 119 aaPredicted RBP16.07■□□□□ 0.16
CAPN3-207ENST00000397200 FPGSQ05932 587 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 TCTN1Q2MV58 587 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 PAPD7Q5XG87 772 aaKnown RBP16.07■□□□□ 0.16
CAPN3-207ENST00000397200 FBXO38Q6PIJ6 1188 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 SLC24A5Q71RS6 500 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 TRAPPC11Q7Z392 1133 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 TMEM192Q8IY95 271 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 CEP112Q8N8E3 955 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 SMG8Q8ND04 991 aaKnown RBP16.07■□□□□ 0.16
CAPN3-207ENST00000397200 LINC01599Q8WXQ3 324 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 CRACR2AQ9BSW2 395 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 APOL6Q9BWW8 343 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 SIX2Q9NPC8 291 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 IL23AQ9NPF7 189 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 NLRC4Q9NPP4 1024 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 HES2Q9Y543 173 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 PCDHA13Q9Y5I0 950 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 ATP8B3O60423 1300 aa16.07■□□□□ 0.16
CAPN3-207ENST00000397200 RALGAPA2Q2PPJ7 1873 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 A0A0U1RQF3 1178 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 IBSPP21815 317 aaPredicted RBP16.06■□□□□ 0.16
CAPN3-207ENST00000397200 CYP27A1Q02318 531 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 CYP24A1Q07973 514 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 KIF5AQ12840 1032 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 IKBKEQ14164 716 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 EXOC3L4Q17RC7 722 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 KLHDC7AQ5VTJ3 777 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 USP37Q86T82 979 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 RTN4RL1Q86UN2 441 aaPredicted RBP16.06■□□□□ 0.16
CAPN3-207ENST00000397200 BRSK2Q8IWQ3 736 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 RABGGTAQ92696 567 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 MFSD14AQ96MC6 490 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 PCDH10Q9P2E7 1040 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 TFR2Q9UP52 801 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 DAAM1Q9Y4D1 1078 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 NR2E3Q9Y5X4 410 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 ANK1P16157 1881 aa16.06■□□□□ 0.16
CAPN3-207ENST00000397200 C9IYK1 514 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 ENPP3O14638 875 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 AKR1B10O60218 316 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 ZNF623O75123 536 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 CXCL8P10145 99 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 ITGA4P13612 1032 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 UCHL3P15374 230 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 PRKCIP41743 596 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 VAMP7P51809 220 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 JAM2P57087 298 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 TUBB4BP68371 445 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 POU5F1Q01860 360 aaKnown RBP16.05■□□□□ 0.16
CAPN3-207ENST00000397200 BFSP1Q12934 665 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 ENOX2Q16206 610 aaKnown RBP16.05■□□□□ 0.16
CAPN3-207ENST00000397200 DCAF17Q5H9S7 520 aaPredicted RBP16.05■□□□□ 0.16
CAPN3-207ENST00000397200 GBP6Q6ZN66 633 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 ECHDC2Q86YB7 292 aa16.05■□□□□ 0.16
CAPN3-207ENST00000397200 TXLNBQ8N3L3 684 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms