RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 ARMC3Q5W041 872 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 NUGGCQ68CJ6 796 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 SPATA21Q7Z572 469 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 NSUN6Q8TEA1 469 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 FBF1Q8TES7 1133 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 STK32AQ8WU08 396 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 UTP4Q969X6 686 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 CAPNS2Q96L46 248 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ROPN1BQ9BZX4 212 aaPredicted RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 TRIM31Q9BZY9 425 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ROPN1Q9HAT0 212 aaPredicted RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 MAP3K20Q9NYL2 800 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 NKX1-2Q9UD57 310 aaPredicted RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 NR2E1Q9Y466 385 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 IPO5O00410 1097 aaKnown RBP11.87□□□□□ -0.51
CUX1-204ENST00000393824 KIAA0391O15091 583 aaKnown RBP11.87□□□□□ -0.51
CUX1-204ENST00000393824 PSMD10O75832 226 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 GFPT2O94808 682 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SLC25A27O95847 323 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 TPBGLP0DKB5 382 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ADORA2AP29274 412 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PEX5P50542 639 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 KLC1Q07866 573 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 MTMR1Q13613 665 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ACVR2BQ13705 512 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 LAMB3Q13751 1172 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 CLUL1Q15846 466 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 FAM110CQ1W6H9 321 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 TRIM68Q6AZZ1 485 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 GPR142Q7Z601 462 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 EXOC3L1Q86VI1 746 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 CCDC65Q8IXS2 484 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ENDOVQ8N8Q3 282 aaKnown RBP11.87□□□□□ -0.51
CUX1-204ENST00000393824 FBXO25Q8TCJ0 367 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 KCNV2Q8TDN2 545 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SNX29Q8TEQ0 813 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SH3TC2Q8TF17 1288 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 EZH1Q92800 747 aaPredicted RBP11.87□□□□□ -0.51
CUX1-204ENST00000393824 MMP19Q99542 508 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ARHGAP39Q9C0H5 1083 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 NT5C3AQ9H0P0 336 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PRDM16Q9HAZ2 1276 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 WRAP73Q9P2S5 460 aaPredicted RBP11.87□□□□□ -0.51
CUX1-204ENST00000393824 C2CD2Q9Y426 696 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 KDM3AQ9Y4C1 1321 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 RASGRF2O14827 1237 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PEX11AO75192 247 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ATP5HO75947 161 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 RNF8O76064 485 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 UPP2O95045 317 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PCK1P35558 622 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 TUBP50607 506 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PLTPP55058 493 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ADAM9Q13443 819 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 DEFB115Q30KQ5 88 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PPP1R15BQ5SWA1 713 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 C17orf99Q6UX52 265 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 OTOP1Q7RTM1 612 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.87□□□□□ -0.516e-7■■■■■ 139.2
CUX1-204ENST00000393824 PIGOQ8TEQ8 1089 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SLC5A5Q92911 643 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 BICD1Q96G01 975 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 HHIPL1Q96JK4 782 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 NAP1L3Q99457 506 aaPredicted RBP11.87□□□□□ -0.51
CUX1-204ENST00000393824 EPAS1Q99814 870 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 ZNF577Q9BSK1 485 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SEMA4AQ9H3S1 761 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 CREBZFQ9NS37 354 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.87□□□□□ -0.513e-7■■■■■ 27.8
CUX1-204ENST00000393824 FBXO40Q9UH90 709 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 TRIM33Q9UPN9 1127 aa11.87□□□□□ -0.51
CUX1-204ENST00000393824 PFASO15067 1338 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 ZBTB39O15060 712 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 MED24O75448 989 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 H2AFZP0C0S5 128 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 TM4SF4P48230 202 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 CYP4A11Q02928 519 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 KCTD2Q14681 263 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 KCTD19Q17RG1 926 aaPredicted RBP11.86□□□□□ -0.51
CUX1-204ENST00000393824 DPY19L2P1Q6NXN4 242 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 B3GNT9Q6UX72 402 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 H2AFVQ71UI9 128 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 CFAP61Q8NHU2 1237 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 DYDC1Q8WWB3 177 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 CKAP2Q8WWK9 683 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 IFT43Q96FT9 208 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 TMEM237Q96Q45 408 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 NAP1L4Q99733 375 aaKnown RBP11.86□□□□□ -0.51
CUX1-204ENST00000393824 GORASP1Q9BQQ3 440 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 CARD9Q9H257 536 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 LRMDAQ9H2I8 198 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 MROH8Q9H579 483 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 ETNK1Q9HBU6 452 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 AGO4Q9HCK5 861 aaKnown RBP11.86□□□□□ -0.51
CUX1-204ENST00000393824 TXLNGQ9NUQ3 528 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 AMFRQ9UKV5 643 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 ZMYND8Q9ULU4 1186 aaPredicted RBP11.86□□□□□ -0.51
CUX1-204ENST00000393824 MCM3APO60318 1980 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 POTEB3A0JP26 581 aa11.86□□□□□ -0.51
CUX1-204ENST00000393824 CETN3O15182 167 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms