RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CHST7Q9NS84 486 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 K7ERI5 159 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 DKC1O60832 514 aaKnown RBP eCLIP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 ZC3H11AO75152 810 aaKnown RBP eCLIP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 CAND2O75155 1236 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 NAMPTP43490 491 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 DRG2P55039 364 aaKnown RBP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 TRIM50Q86XT4 487 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 FGD4Q96M96 766 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 R3HDM2Q9Y2K5 976 aaKnown RBP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 CNMDO75829 334 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 ITGBL1O95965 494 aaPredicted RBP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 HARSP12081 509 aaKnown RBP14.3□□□□□ -0.12
CCDC3-202ENST00000378839 EDNRBP24530 442 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 BIRC3Q13489 604 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 SNX1Q13596 522 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 SEL1L2Q5TEA6 688 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 DNERQ8NFT8 737 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 MSTO1Q9BUK6 570 aa14.3□□□□□ -0.12
CCDC3-202ENST00000378839 A0A0G2JMZ2 1700 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 ZBTB42B2RXF5 422 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 ADM5C9JUS6 153 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 MAPK4P31152 587 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 PMS2P54278 862 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 RWDD2BP57060 319 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 ENPEPQ07075 957 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 PTP4A2Q12974 167 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 STRN3Q13033 797 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 CUL2Q13617 745 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 CHST13Q8NET6 341 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 MORC4Q8TE76 937 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 KCNN1Q92952 543 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 DDX27Q96GQ7 796 aaKnown RBP14.29□□□□□ -0.12
CCDC3-202ENST00000378839 FNBP1Q96RU3 617 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 FAM118BQ9BPY3 351 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 PCDHB2Q9Y5E7 798 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 OTOFQ9HC10 1997 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 LRRC37A2A6NM11 1700 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 FSCN2O14926 492 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 TCF4P15884 667 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 TAS2R40P59535 323 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 MAGOHP61326 146 aaKnown RBP14.29□□□□□ -0.12
CCDC3-202ENST00000378839 CENPCQ03188 943 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 TMEM270Q6UE05 265 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 MOB2Q70IA6 237 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 ENOSF1Q7L5Y1 443 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 UHMK1Q8TAS1 419 aaKnown RBP14.29□□□□□ -0.12
CCDC3-202ENST00000378839 DEPTORQ8TB45 409 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 ZNF668Q96K58 619 aaPredicted RBP14.29□□□□□ -0.12
CCDC3-202ENST00000378839 EPN3Q9H201 632 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 AAASQ9NRG9 546 aa14.29□□□□□ -0.12
CCDC3-202ENST00000378839 PGK2P07205 417 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 GJB1P08034 283 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 NF2P35240 595 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 CORO7P57737 925 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 MTMR3Q13615 1198 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 SLC29A2Q14542 456 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 C12orf50Q8NA57 414 aaPredicted RBP14.28□□□□□ -0.12
CCDC3-202ENST00000378839 PRPF31Q8WWY3 499 aaKnown RBP14.28□□□□□ -0.12
CCDC3-202ENST00000378839 C11orf70Q9BRQ4 267 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 TXNRD2Q9NNW7 524 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 FGFR4P22455 802 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 MARK3P27448 753 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 TCF7P36402 384 aaPredicted RBP14.28□□□□□ -0.12
CCDC3-202ENST00000378839 NOMO3P69849 1222 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 KRT71Q3SY84 523 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 ZBTB33Q86T24 672 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 CCDC105Q8IYK2 499 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 MDM1Q8TC05 714 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 ART4Q93070 314 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 TLCD1Q96CP7 247 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 CLMNQ96JQ2 1002 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 PABPC3Q9H361 631 aaKnown RBP14.28□□□□□ -0.12
CCDC3-202ENST00000378839 LRRC19Q9H756 370 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 IRF6O14896 467 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 GGPS1O95749 300 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 PPP2R5EQ16537 467 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 HSDL1Q3SXM5 330 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 USP37Q86T82 979 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 RIOX2Q8IUF8 465 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 SLC7A3Q8WY07 619 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 KIAA1586Q9HCI6 787 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 AVENQ9NQS1 362 aaPredicted RBP14.28□□□□□ -0.12
CCDC3-202ENST00000378839 PCDHB4Q9Y5E5 795 aa14.28□□□□□ -0.12
CCDC3-202ENST00000378839 ABLIM1O14639 778 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 ADCY3O60266 1144 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 MSCO60682 206 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 CLTAP09496 248 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 IVDP26440 423 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 ADCY2Q08462 1091 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 MAMLD1Q13495 774 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 ZNF568Q3ZCX4 644 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 WDR44Q5JSH3 913 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 EP400NLQ6ZTU2 488 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 PRUNE1Q86TP1 453 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 NCAPG2Q86XI2 1143 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 UBR7Q8N806 425 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 PWWP2AQ96N64 755 aa14.27□□□□□ -0.12
CCDC3-202ENST00000378839 CGRRF1Q99675 332 aa14.27□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms