RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 IZUMO3Q5VZ72 239 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 CIAPIN1Q6FI81 312 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ZNF746Q6NUN9 644 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 DEPDC7Q96QD5 511 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 GINS4Q9BRT9 223 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 LSM7Q9UK45 103 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 GSPT2Q8IYD1 628 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 PUS3Q9BZE2 481 aaKnown RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 BSDC1Q9NW68 430 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 CD274Q9NZQ7 290 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 KCNJ6P48051 423 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 SLFNL1Q499Z3 407 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 PIK3R5Q8WYR1 880 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 CNBD2Q96M20 576 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 FAM217BQ9NTX9 383 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ASZ1Q8WWH4 475 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 CLMNQ96JQ2 1002 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 E4F1Q66K89 784 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ST13P5Q8NFI4 369 aaPredicted RBP13.09□□□□□ -0.31
VPS13A-204ENST00000376634 ARHGEF3Q9NR81 526 aa13.09□□□□□ -0.31
VPS13A-204ENST00000376634 PLEKHG2Q9H7P9 1386 aa13.08□□□□□ -0.31
VPS13A-204ENST00000376634 C3orf70A6NLC5 250 aaPredicted RBP13.08□□□□□ -0.31
VPS13A-204ENST00000376634 KDELC2Q7Z4H8 507 aa13.08□□□□□ -0.31
VPS13A-204ENST00000376634 SH3RF3Q8TEJ3 882 aaPredicted RBP13.08□□□□□ -0.31
VPS13A-204ENST00000376634 COA1Q9GZY4 146 aa13.08□□□□□ -0.31
VPS13A-204ENST00000376634 BRD2P25440 801 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 INPP5DQ92835 1189 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 IMPAD1Q9NX62 359 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 UVRAGQ9P2Y5 699 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 STK36Q9NRP7 1315 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 SULT1E1P49888 294 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 EIF2B5Q13144 721 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 KRR1Q13601 381 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 DAB2IPQ5VWQ8 1189 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ARHGAP17Q68EM7 881 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 VPS50Q96JG6 964 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ELMO2Q96JJ3 720 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 AP3M2P53677 418 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ARHGEF7Q14155 803 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 TK2O00142 265 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PSMD3O43242 534 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 CYP2C19P33261 490 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ACTN3Q08043 901 aaPredicted RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 RASGRF1Q13972 1273 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 NLRP9Q7RTR0 991 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PUS7LQ9H0K6 701 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 MAN1C1Q9NR34 630 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PCDHA6Q9UN73 950 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PCDHA8Q9Y5H6 950 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 M0R3G1 203 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ALDH1A2O94788 518 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PLEKHA8P1O95397 391 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 SOX6P35712 828 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 NUP62P37198 522 aaPredicted RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 QARSP47897 775 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ARMC6Q6NXE6 501 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 MTHFD1LQ6UB35 978 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PRPF18Q99633 342 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 TMEM191CA6NGB0 347 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ASMTLO95671 621 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 SSTR3P32745 418 aaPredicted RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 SLC16A1P53985 500 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ACTR2P61160 394 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 TMED8Q6PL24 325 aaPredicted RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 PGBD3Q8N328 593 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 SMG5Q9UPR3 1016 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 KCNQ3O43525 872 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 SOAT1P35610 550 aa13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ZC3H7BQ9UGR2 993 aaKnown RBP13.08□□□□□ -0.32
VPS13A-204ENST00000376634 ANO9A1A5B4 782 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 FAM187AA6NFU0 413 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 POTECB2RU33 542 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 ERVV-1B6SEH8 477 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 WRNIP1Q96S55 665 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 SEC31BQ9NQW1 1179 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 APOA4P06727 396 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 ATP1A3P13637 1013 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 RGS4P49798 205 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 TMEM132DQ14C87 1099 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 RABGAP1LQ5R372 815 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 BBS7Q8IWZ6 715 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 KRT78Q8N1N4 520 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 DTX3LQ8TDB6 740 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 CYFIP2Q96F07 1278 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 ZCWPW1Q9H0M4 648 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 QTRT2Q9H974 415 aaKnown RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 PRRG1O14668 218 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 TERF2Q15554 542 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 GPD1LQ8N335 351 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 MAP3K4Q9Y6R4 1608 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 RNF103O00237 685 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 RASSF9O75901 435 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 PRCPP42785 496 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 KLC1Q07866 573 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 CACNB2Q08289 660 aaPredicted RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 SLC30A9Q6PML9 568 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 FKBP9O95302 570 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 KCNA3P22001 575 aa13.07□□□□□ -0.32
VPS13A-204ENST00000376634 CYLC2Q14093 348 aaPredicted RBP13.07□□□□□ -0.32
VPS13A-204ENST00000376634 FKBP9P1Q75LS8 142 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms