RNA–Protein interactions for RNA: ENST00000375340.10

SMC1A-202, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 1 (best) BASIC

Gene SMC1A, Length 9,930 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-202ENST00000375340 ANKRD20A4Q4UJ75 823 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ANKRD20A2Q5SQ80 823 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ANKRD20A1Q5TYW2 823 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ARHGEF26Q96DR7 871 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 ASNSD1Q9NWL6 643 aa6.92□□□□□ -1.3
SMC1A-202ENST00000375340 FNDC3AQ9Y2H6 1198 aaKnown RBP6.92□□□□□ -1.3
SMC1A-202ENST00000375340 FAM237AA0A1B0GTK4 181 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 OPLAHO14841 1288 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SLC12A3P55017 1021 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 PTK7Q13308 1070 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TAF12Q16514 161 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CENPPQ6IPU0 288 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 OR6B3Q8NGW1 331 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 ATP8B4Q8TF62 1192 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CBWD1Q9BRT8 395 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TBC1D22BQ9NU19 505 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 BLOC1S4Q9NUP1 217 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SETD1AO15047 1707 aaKnown RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 ADAMTS3O15072 1205 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CASP5P51878 434 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CDH6P55285 790 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 DNAJC3Q13217 504 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 STAT4Q14765 748 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 RBBP8NLQ8NC74 664 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM237Q96Q45 408 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 APOBEC2Q9Y235 224 aaKnown RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 NUP188Q5SRE5 1749 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TISP43B9A030 160 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SH3BP5O60239 455 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 ITIH2P19823 946 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CIITAP33076 1130 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 AP2B1P63010 937 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 ZNF667Q5HYK9 610 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 NSMCE1Q8WV22 266 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 KIF9Q9HAQ2 790 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 NDE1Q9NXR1 346 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TSR3Q9UJK0 312 aaKnown RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 ARP10275 920 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 KCNA1Q09470 495 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SYDE1Q6ZW31 735 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 COL23A1Q86Y22 540 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 NCAPGQ9BPX3 1015 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 NACA2Q9H009 215 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 JPH1Q9HDC5 661 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TBXAS1P24557 533 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SLC1A1P43005 524 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 RGS7P49802 495 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SLC13A5Q86YT5 568 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 KDM4CQ9H3R0 1056 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 METTL5Q9NRN9 209 aaKnown RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 ZHX2Q9Y6X8 837 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 KRT37O76014 449 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 PRLRP16471 622 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 RPA1P27694 616 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CEP70Q8NHQ1 597 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SLC26A7Q8TE54 656 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 STAMBPL1Q96FJ0 436 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM39BQ9GZU3 492 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 FAM49AQ9H0Q0 323 aaPredicted RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 BCAP29Q9UHQ4 241 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 M0QZ92 97 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 UBOX5O94941 541 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 AMPD2Q01433 879 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 SIX6OS1Q8N1H7 587 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CDC42EP4Q9H3Q1 356 aaKnown RBP6.91□□□□□ -1.3
SMC1A-202ENST00000375340 PHTF1Q9UMS5 762 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 LAMB4A4D0S4 1761 aa6.91□□□□□ -1.3
SMC1A-202ENST00000375340 CCDC78A2IDD5 438 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 NEMP1O14524 444 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 PBX1P40424 430 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 EMC2Q15006 297 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 TAF1BQ53T94 588 aaPredicted RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 TMEM35BQ8NCS4 154 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 TRPV6Q9H1D0 765 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 MRPL46Q9H2W6 279 aaKnown RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 KCNH7Q9NS40 1196 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 HLA-DRAP01903 254 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 KRT10P13645 584 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 ITGB3BPQ13352 177 aaPredicted RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 FAM47CQ5HY64 1035 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 PDZD4Q76G19 769 aaPredicted RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 KDELC2Q7Z4H8 507 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 PRUNE1Q86TP1 453 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 PRPF39Q86UA1 669 aaKnown RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 CBWD2Q8IUF1 395 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 MAGEB18Q96M61 343 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 ACAP3Q96P50 834 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 POLR3CQ9BUI4 534 aaPredicted RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 GTSE1Q9NYZ3 720 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 AFG3L2Q9Y4W6 797 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 GTF2H1P32780 548 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 NFIAQ12857 509 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 MANSC1Q9H8J5 431 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 RASSF10A6NK89 507 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 ANP32DO95626 131 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 WEE2P0C1S8 567 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 CCND1P24385 295 aa6.9□□□□□ -1.3
SMC1A-202ENST00000375340 PPM1FP49593 454 aaPredicted RBP6.9□□□□□ -1.3
SMC1A-202ENST00000375340 KRT76Q01546 638 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms