RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ZMAT2Q96NC0 199 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 C1orf112Q9NSG2 853 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 FAM105AQ9NUU6 356 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 SPTLC3Q9NUV7 552 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 TRMT1Q9NXH9 659 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 SIX4Q9UIU6 781 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 TRIP11Q15643 1979 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 PQBP1O60828 265 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 GFPT2O94808 682 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 ASS1P00966 412 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 EIF4A3P38919 411 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 MFAP3P55082 362 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 MYL6P60660 151 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 TDRD12Q587J7 1177 aaKnown RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 CCDC170Q8IYT3 715 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 ACRBPQ8NEB7 543 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 KIF12Q96FN5 646 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 RRAGDQ9NQL2 400 aaPredicted RBP20.04■□□□□ 0.8
CLN3-206ENST00000360019 CNTN3Q9P232 1028 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 PPP2R2CQ9Y2T4 447 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 NUB1Q9Y5A7 615 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 PCDHB2Q9Y5E7 798 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 ADGRG1Q9Y653 693 aa20.04■□□□□ 0.8
CLN3-206ENST00000360019 UMODL1Q5DID0 1318 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 EVI5O60447 810 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 COL6A1P12109 1028 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 PRKCIP41743 596 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 GJA8P48165 433 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 NOP14P78316 857 aaKnown RBP20.03■□□□□ 0.8
CLN3-206ENST00000360019 KLHL30Q0D2K2 578 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 MAPK8IP2Q13387 824 aaPredicted RBP20.03■□□□□ 0.8
CLN3-206ENST00000360019 ASTE1Q2TB18 679 aaPredicted RBP20.03■□□□□ 0.8
CLN3-206ENST00000360019 SLC39A5Q6ZMH5 540 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 NT5DC4Q86YG4 428 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 SHC3Q92529 594 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 CCDC42Q96M95 316 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 ARID3AQ99856 593 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 XYLT2Q9H1B5 865 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 HAUS4Q9H6D7 363 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 PARP2Q9UGN5 583 aa20.03■□□□□ 0.8
CLN3-206ENST00000360019 KIAA0100Q14667 2235 aaKnown RBP20.03■□□□□ 0.8
CLN3-206ENST00000360019 SSU72P8A0A1W2PR75 194 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 ITGB3P05106 788 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 FERP16591 822 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 ZSCAN20P17040 1043 aaPredicted RBP20.02■□□□□ 0.8
CLN3-206ENST00000360019 GUCY2FP51841 1108 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 DSC3Q14574 896 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 XKR4Q5GH76 650 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 GLRA4Q5JXX5 417 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 LRRC8DQ7L1W4 858 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 PPP1R13BQ96KQ4 1090 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 RNF19AQ9NV58 838 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 KLK14Q9P0G3 267 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 DERAQ9Y315 318 aa20.02■□□□□ 0.8
CLN3-206ENST00000360019 REXO2Q9Y3B8 237 aaKnown RBP20.02■□□□□ 0.8
CLN3-206ENST00000360019 SELPP16109 830 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 CYLC1P35663 651 aaPredicted RBP20.02■□□□□ 0.79
CLN3-206ENST00000360019 KIF11P52732 1056 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 PTK2Q05397 1052 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 TRPC3Q13507 836 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 ZBTB6Q15916 424 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 ANKRD33Q7Z3H0 272 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 IMPG2Q9BZV3 1241 aa20.02■□□□□ 0.79
CLN3-206ENST00000360019 MEIS3P2A8K0S8 358 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 ZNF263O14978 683 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 KRT19P08727 400 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 CCDC175P0C221 793 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 BFSP2Q13515 415 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 CUL2Q13617 745 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 SGSM1Q2NKQ1 1148 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 ENOSF1Q7L5Y1 443 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 ZNF571Q7Z3V5 609 aaPredicted RBP20.01■□□□□ 0.79
CLN3-206ENST00000360019 FAM71AQ8IYT1 594 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 TRAIPQ9BWF2 469 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 DPP3Q9NY33 737 aa20.01■□□□□ 0.79
CLN3-206ENST00000360019 A0A0U1RQJ8 604 aa20■□□□□ 0.79
CLN3-206ENST00000360019 EIF3CLB5ME19 914 aaKnown RBP20■□□□□ 0.79
CLN3-206ENST00000360019 GPNMBQ14956 572 aa20■□□□□ 0.79
CLN3-206ENST00000360019 ZNF699Q32M78 642 aa20■□□□□ 0.79
CLN3-206ENST00000360019 REXO1L1PQ8IX06 675 aa20■□□□□ 0.79
CLN3-206ENST00000360019 ATRIPQ8WXE1 791 aa20■□□□□ 0.79
CLN3-206ENST00000360019 FAM81BQ96LP2 452 aa20■□□□□ 0.79
CLN3-206ENST00000360019 EIF3CQ99613 913 aaKnown RBP20■□□□□ 0.79
CLN3-206ENST00000360019 ADAM2Q99965 735 aa20■□□□□ 0.79
CLN3-206ENST00000360019 DEF6Q9H4E7 631 aa20■□□□□ 0.79
CLN3-206ENST00000360019 TUBGCP4Q9UGJ1 667 aa20■□□□□ 0.79
CLN3-206ENST00000360019 ITGA11Q9UKX5 1188 aa20■□□□□ 0.79
CLN3-206ENST00000360019 BZW2Q9Y6E2 419 aaKnown RBP20■□□□□ 0.79
CLN3-206ENST00000360019 SMIM28A0A1B0GU29 152 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 PITPNM1O00562 1244 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 KCNE1P15382 129 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 POLR2BP30876 1174 aaKnown RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 TRIM60Q495X7 471 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 FMNL3Q8IVF7 1028 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 OLIG1Q8TAK6 271 aa19.99■□□□□ 0.79
CLN3-206ENST00000360019 C18orf25Q96B23 403 aaPredicted RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 IFIH1Q9BYX4 1025 aaKnown RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 PDCD11Q14690 1871 aaKnown RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 TLR3O15455 904 aaKnown RBP19.99■□□□□ 0.79
CLN3-206ENST00000360019 ZSCAN12O43309 604 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms