RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 NSFP46459 744 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 FNTAP49354 379 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 STAT5BP51692 787 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 IRX5P78411 483 aaPredicted RBP22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 CAPSQ13938 189 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 PTGISQ16647 500 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 C2CD6Q53TS8 623 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 LLGL2Q6P1M3 1020 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 MON1BQ7L1V2 547 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 OR5B17Q8NGF7 314 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 TMEM51Q9NW97 253 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 PARP2Q9UGN5 583 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 NOVA2Q9UNW9 492 aaKnown RBP22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 NDUFAB1O14561 156 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 ADCY3O60266 1144 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 IFFO1Q0D2I5 559 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 LLGL1Q15334 1064 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 PLVAPQ9BX97 442 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 SLC12A6Q9UHW9 1150 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 PTPN22Q9Y2R2 807 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 PCDHB4Q9Y5E5 795 aa22.24■■□□□ 1.15
CCDC88B-203ENST00000359902 ANKRD65E5RJM6 399 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 NUDT17P0C025 328 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 SLC1A1P43005 524 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 CORO7P57737 925 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 DRP2Q13474 957 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 SEZ6Q53EL9 994 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 TMEM270Q6UE05 265 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 RNF25Q96BH1 459 aaPredicted RBP22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 FEZ2Q9UHY8 353 aaPredicted RBP22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 CNTN6Q9UQ52 1028 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 NUB1Q9Y5A7 615 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 DCDC2CA8MYV0 355 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 SHBGP04278 402 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 CLTAP09496 248 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 NEDD9Q14511 834 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 C10orf67Q8IYJ2 551 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 ABRAQ8N0Z2 381 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 SPATC1LQ9H0A9 340 aa22.23■■□□□ 1.15
CCDC88B-203ENST00000359902 UMODL1Q5DID0 1318 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 TTLL13PA6NNM8 815 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 MAFO75444 373 aaPredicted RBP22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 ODF2Q5BJF6 829 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 FAM160B1Q5W0V3 765 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 SCARA3Q6AZY7 606 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 NCAPG2Q86XI2 1143 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 NLGN2Q8NFZ4 835 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 PRPF31Q8WWY3 499 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 ART4Q93070 314 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 PASKQ96RG2 1323 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 MAGOHP61326 146 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 PPP2R2AP63151 447 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 TRIM72Q6ZMU5 477 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 C1orf54Q8WWF1 131 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 SEPT1Q8WYJ6 367 aa22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 MTRF1LQ9UGC7 380 aaKnown RBP22.22■■□□□ 1.15
CCDC88B-203ENST00000359902 PTPRFP10586 1907 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 SRRM3A6NNA2 597 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 TGFB3P10600 412 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 GNA15P30679 374 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 TCF7P36402 384 aaPredicted RBP22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 SEC24CP53992 1094 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 NOMO3P69849 1222 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 NOP14P78316 857 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 PASD1Q8IV76 773 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 SLCO2A1Q92959 643 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 TLCD1Q96CP7 247 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 DDX27Q96GQ7 796 aaKnown RBP22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 SEMA4AQ9H3S1 761 aa22.21■■□□□ 1.15
CCDC88B-203ENST00000359902 ECEL1O95672 775 aa22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 HARSP12081 509 aaKnown RBP22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 TBXAS1P24557 533 aaPredicted RBP22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 NCOA4Q13772 614 aa22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 SGO2Q562F6 1265 aa22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 DENND2CQ68D51 928 aa22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 ZPBP2Q6X784 338 aa22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 RBBP8NLQ8NC74 664 aaPredicted RBP22.2■■□□□ 1.15
CCDC88B-203ENST00000359902 A0A0G2JMZ2 1700 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 CAND2O75155 1236 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 PROSCO94903 275 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 SSTR3P32745 418 aaPredicted RBP22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 SLC29A2Q14542 456 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 LY6KQ17RY6 165 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 LIN9Q5TKA1 542 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 METTL7BQ6UX53 244 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 EEPD1Q7L9B9 569 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 C11orf70Q9BRQ4 267 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 HERPUD2Q9BSE4 406 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 R3HDMLQ9H3Y0 253 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 ADAM22Q9P0K1 906 aa22.2■■□□□ 1.14
CCDC88B-203ENST00000359902 MAMLD1Q13495 774 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 R3HDM1Q15032 1099 aaKnown RBP22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 DAB2IPQ5VWQ8 1189 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 GADL1Q6ZQY3 521 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 PHF13Q86YI8 300 aaPredicted RBP22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 VCPIP1Q96JH7 1222 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 CCT8L2Q96SF2 557 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 FAM189A1O60320 539 aa22.19■■□□□ 1.14
CCDC88B-203ENST00000359902 MSCO60682 206 aa22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms