RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 TMEM88BA6NKF7 163 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 CRCPO75575 148 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 SKIP12755 728 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 GPC3P51654 580 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 PPATQ06203 517 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 RGMBQ6NW40 437 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 RHOT1Q8IXI2 618 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 SPATA20Q8TB22 786 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 ERAP1Q9NZ08 941 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 AFDNP55196 1824 aaKnown RBP13.04□□□□□ -0.32
COLCA1-201ENST00000355430 ATRNO75882 1429 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 WTIPA6NIX2 430 aaPredicted RBP13.04□□□□□ -0.32
COLCA1-201ENST00000355430 GOLGA8CPA6NN73 597 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 GYG2O15488 501 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 SCP2P22307 547 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 PDE1BQ01064 536 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 AMPD2Q01433 879 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 LMBRD2Q68DH5 695 aaPredicted RBP13.04□□□□□ -0.32
COLCA1-201ENST00000355430 CYB5D1Q6P9G0 228 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 KIF2BQ8N4N8 673 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 C18orf8Q96DM3 657 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 FAM118BQ9BPY3 351 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 DDX23Q9BUQ8 820 aaKnown RBP13.04□□□□□ -0.32
COLCA1-201ENST00000355430 FGFR1OP2Q9NVK5 253 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.04□□□□□ -0.32
COLCA1-201ENST00000355430 TMEM120BA0PK00 339 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 C17orf102A2RUQ5 167 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 WNT10BO00744 389 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 GIPC1O14908 333 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 KLRC4O43908 158 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 IRX4P78413 519 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 MXD4Q14582 209 aaPredicted RBP13.04□□□□□ -0.32
COLCA1-201ENST00000355430 SCN4BQ8IWT1 228 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 FBXL13Q8NEE6 735 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 ZNF560Q96MR9 790 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 YIPF3Q9GZM5 350 aa13.04□□□□□ -0.32
COLCA1-201ENST00000355430 SAT1P21673 171 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 GNA15P30679 374 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 EPS8L3Q8TE67 593 aaKnown RBP13.03□□□□□ -0.32
COLCA1-201ENST00000355430 OSGEPQ9NPF4 335 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 STARD7Q9NQZ5 370 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 GDF3Q9NR23 364 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 EIF3DO15371 548 aaKnown RBP eCLIP13.03□□□□□ -0.32
COLCA1-201ENST00000355430 CAND2O75155 1236 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 MIIPQ5JXC2 388 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 MAP3K21Q5TCX8 1036 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 TTC39CQ8N584 583 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 CPA5Q8WXQ8 436 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 LRRC4BQ9NT99 713 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 DONSONQ9NYP3 566 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 SIK3Q9Y2K2 1263 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 NOL3O60936 208 aaKnown RBP13.03□□□□□ -0.32
COLCA1-201ENST00000355430 MYBL1P10243 752 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 RAD23BP54727 409 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 ATL2Q8NHH9 583 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 CDKL2Q92772 493 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 C9orf72Q96LT7 481 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 ATP11BQ9Y2G3 1177 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 FKTNO75072 461 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 CYP2C9P11712 490 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 ITGA4P13612 1032 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 POLE2P56282 527 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 TIPINQ9BVW5 301 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 TRAIPQ9BWF2 469 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 LTN1O94822 1766 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 ASAP2O43150 1006 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 DIAPH2O60879 1101 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 GIT2Q14161 759 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 PRPSAP1Q14558 356 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 PLCB4Q15147 1175 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 ARL13BQ3SXY8 428 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 FKBP1CQ5VVH2 108 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 GLB1LQ6UWU2 654 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 MIPOL1Q8TD10 442 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 SCYL1Q96KG9 808 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 CYTH2Q99418 400 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 BLOC1S4Q9NUP1 217 aa13.03□□□□□ -0.32
COLCA1-201ENST00000355430 EPHB6O15197 1021 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 PJA2O43164 708 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 CYTH3O43739 400 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 HAUS5O94927 633 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 ITIH2P19823 946 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 COILP38432 576 aaPredicted RBP13.02□□□□□ -0.32
COLCA1-201ENST00000355430 ARSEP51690 589 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 STAT4Q14765 748 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 OR6B2Q6IFH4 312 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 ZC3H18Q86VM9 953 aaKnown RBP13.02□□□□□ -0.32
COLCA1-201ENST00000355430 TTC30AQ86WT1 665 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 SAMD3Q8N6K7 520 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 FAF2Q96CS3 445 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 BTBD6Q96KE9 485 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 ANGPTL2Q9UKU9 493 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 PCDHB7Q9Y5E2 793 aa13.02□□□□□ -0.32
COLCA1-201ENST00000355430 NKRFO15226 690 aaKnown RBP eCLIP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 STRNO43815 780 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 LMNAP02545 664 aaKnown RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 ICAM1P05362 532 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 SCTRP47872 440 aa13.02□□□□□ -0.33
COLCA1-201ENST00000355430 TPD52P55327 224 aaPredicted RBP13.02□□□□□ -0.33
COLCA1-201ENST00000355430 ERVK-9P63128 1117 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms