RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 NBPF20Q3BBV1 942 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 HDXQ7Z353 690 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 DNAAF3Q8N9W5 541 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 C18orf8Q96DM3 657 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 TMEM134Q9H6X4 195 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 COL18A1P39060 1754 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 MIF4GDA9UHW6 222 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 ACKR2O00590 384 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 NEMP1O14524 444 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 RIOK3O14730 519 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 CRYBB1P53674 252 aaPredicted RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 STK4Q13043 487 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 PTPAQ15257 358 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 CYP2W1Q8TAV3 490 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 SKA2Q8WVK7 121 aaPredicted RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 CDK5RAP1Q96SZ6 601 aaKnown RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 C11orf49Q9H6J7 331 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 SPTLC3Q9NUV7 552 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 KIAA1257Q9ULG3 409 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 MAD1L1Q9Y6D9 718 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 FRMPD4Q14CM0 1322 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 ITGB4P16144 1822 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 XYLBO75191 536 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 ECEL1O95672 775 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 TOB1P50616 345 aaPredicted RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 CACNB2Q08289 660 aaPredicted RBP10.78□□□□□ -0.68
USP54-201ENST00000339859 MYBPC2Q14324 1141 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 TMEM119Q4V9L6 283 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 EFHC1Q5JVL4 640 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 CTAGE3PQ8IX95 158 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 FIBCD1Q8N539 461 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 TMC2Q8TDI7 906 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 ZNF558Q96NG5 402 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 ADAM2Q99965 735 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 HIPK3Q9H422 1215 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 ABHD10Q9NUJ1 306 aa10.78□□□□□ -0.68
USP54-201ENST00000339859 RPTORQ8N122 1335 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 PGRMC1O00264 195 aaKnown RBP10.77□□□□□ -0.68
USP54-201ENST00000339859 PAX3P23760 479 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 ZPBP2Q6X784 338 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 TRAPPC12Q8WVT3 735 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 RNF14Q9UBS8 474 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 ADAMTS1Q9UHI8 967 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 ZDHHC9Q9Y397 364 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 UMODL1Q5DID0 1318 aa10.77□□□□□ -0.68
USP54-201ENST00000339859 CPP00450 1065 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SLC10A3P09131 477 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SFSWAPQ12872 951 aaKnown RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 ADAT2Q7Z6V5 191 aaKnown RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 CDR2LQ86X02 465 aaPredicted RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 C7orf61Q8IZ16 206 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 MAGOHBQ96A72 148 aaKnown RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 MAFO75444 373 aaPredicted RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 PSMD10O75832 226 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 ZNF720Q7Z2F6 126 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 ZNF467Q7Z7K2 595 aaPredicted RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP54-201ENST00000339859 PORCNQ9H237 461 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 CASTOR2A6NHX0 329 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SOWAHDA6NJG2 315 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 ATP1A3P13637 1013 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SELPP16109 830 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 PAMP19021 973 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 KCNA10Q16322 511 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 DNAJC21Q5F1R6 531 aaKnown RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.77□□□□□ -0.69
USP54-201ENST00000339859 KCNMB3Q9NPA1 279 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 CHST12Q9NRB3 414 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SLC4A7Q9Y6M7 1214 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 UBR2Q8IWV8 1755 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 POMCP01189 267 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SLC4A1P02730 911 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SERPINB6P35237 376 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 PSMC6P62333 389 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 CLEC17AQ6ZS10 378 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 CCDC60Q8IWA6 550 aaPredicted RBP10.77□□□□□ -0.69
USP54-201ENST00000339859 GDAP1Q8TB36 358 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 SRRDQ9UH36 339 aa10.77□□□□□ -0.69
USP54-201ENST00000339859 FTLP02792 175 aaPredicted RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 SLURP2P0DP57 97 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CCL23P55773 120 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 AMPD2Q01433 879 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CARD6Q9BX69 1037 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 OLFML3Q9NRN5 406 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 ZNF112Q9UJU3 913 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 DDX41Q9UJV9 622 aaKnown RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 IGKV6D-41A0A0C4DH26 115 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 SMIM35A0A1B0GVV1 85 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CCDC66A2RUB6 948 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 SEPT6Q14141 434 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 C10orf120Q5SQS8 335 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 ITPRIPL1Q6GPH6 555 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 DHX40Q8IX18 779 aaKnown RBP10.76□□□□□ -0.69
USP54-201ENST00000339859 CCDC110Q8TBZ0 833 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 TSPAN18Q96SJ8 248 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 GMLQ99445 158 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 RNF186Q9NXI6 227 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 FAM50BQ9Y247 325 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 RWDD3Q9Y3V2 267 aa10.76□□□□□ -0.69
USP54-201ENST00000339859 CUL2Q13617 745 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms