RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GJA8P48165 433 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 OSTNP61366 133 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 TFAMQ00059 246 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 PAK2Q13177 524 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 BFSP2Q13515 415 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 MTF1Q14872 753 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 TMEM132DQ14C87 1099 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 WDR44Q5JSH3 913 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 JADE1Q6IE81 842 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 TOGARAM2Q6ZUX3 1019 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 MRPL10Q7Z7H8 261 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 HACE1Q8IYU2 909 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 C1orf127Q8N9H9 656 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 XYLT2Q9H1B5 865 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 SNTG2Q9NY99 539 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 PADI3Q9ULW8 664 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 CNTN6Q9UQ52 1028 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 IPPQ9Y573 584 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 ATP8B3O60423 1300 aa16.07■□□□□ 0.16
CCDC88C-202ENST00000334448 HSPA1AP0DMV8 641 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 HSPA1BP0DMV9 641 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 GHRP10912 638 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 SELPP16109 830 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 LBX1P52954 281 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 NOP14P78316 857 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 SGSM1Q2NKQ1 1148 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 TWF2Q6IBS0 349 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 PPM1KQ8N3J5 372 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 UBR7Q8N806 425 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 FAM84AQ96KN4 292 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 CCDC42Q96M95 316 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 IMPG2Q9BZV3 1241 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 APOBEC3GQ9HC16 384 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 FAM105AQ9NUU6 356 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 SIX4Q9UIU6 781 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 NENFQ9UMX5 172 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 PPP2R2CQ9Y2T4 447 aa16.06■□□□□ 0.16
CCDC88C-202ENST00000334448 ANK1P16157 1881 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 FOXN3O00409 490 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 INPPL1O15357 1258 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 EVI5O60447 810 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 PHACTR2O75167 634 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 SKIP12755 728 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 CYP3A5P20815 502 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 CD52P31358 61 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 EIF4A3P38919 411 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 KIF11P52732 1056 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 KLHL30Q0D2K2 578 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 CUL2Q13617 745 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 MBTPS1Q14703 1052 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 LRRC8DQ7L1W4 858 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 OLIG1Q8TAK6 271 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 KAT5Q92993 513 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 FAM212AQ96EL1 285 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 PPP1R13BQ96KQ4 1090 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 NIF3L1Q9GZT8 377 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 REXO2Q9Y3B8 237 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 PCDHB2Q9Y5E7 798 aa16.05■□□□□ 0.16
CCDC88C-202ENST00000334448 A0A0U1RQF3 1178 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 TLR3O15455 904 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 XPOTO43592 962 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 PARNO95453 639 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 CST3P01034 146 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 PLEKP08567 350 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 ZSCAN20P17040 1043 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 ACO1P21399 889 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 KRT83P78385 493 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 PTK2Q05397 1052 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 TRPC3Q13507 836 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 SLC18A3Q16572 532 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 SLC39A5Q6ZMH5 540 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 NYAP1Q6ZVC0 841 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 REXO1L1PQ8IX06 675 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 C17orf53Q8N3J3 647 aaPredicted RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 LRRC52Q8N7C0 313 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 TATDN2Q93075 761 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 KIF12Q96FN5 646 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 ZMAT2Q96NC0 199 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 PI4K2AQ9BTU6 479 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 UBQLN1Q9UMX0 589 aaKnown RBP16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 GIT1Q9Y2X7 761 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 HES2Q9Y543 173 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 NUB1Q9Y5A7 615 aa16.04■□□□□ 0.16
CCDC88C-202ENST00000334448 USP27XA6NNY8 438 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 IPO7O95373 1038 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 TUBB4AP04350 444 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF132P52740 706 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 MYL6P60660 151 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 RBP5P82980 135 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 NFX1Q12986 1120 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 BMS1Q14692 1282 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 ARHGAP44Q17R89 818 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF699Q32M78 642 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 TDRD12Q587J7 1177 aaKnown RBP16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 ZNF571Q7Z3V5 609 aaPredicted RBP16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 BEST2Q8NFU1 509 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 DESI2Q9BSY9 194 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 FTHL17Q9BXU8 183 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 BCO2Q9BYV7 579 aa16.03■□□□□ 0.16
CCDC88C-202ENST00000334448 OSBPL7Q9BZF2 842 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms