RNA–Protein interactions for RNA: ENST00000323144.11

TPM3-204, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,088 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-204ENST00000323144 ASCL5Q7RTU5 278 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 GPBP1Q86WP2 473 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 NPAS3Q8IXF0 933 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 SPIRE2Q8WWL2 714 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 CDK5RAP3Q96JB5 506 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 KXD1Q9BQD3 176 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 TIPINQ9BVW5 301 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 ARHGEF3Q9NR81 526 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 CDH7Q9ULB5 785 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 SMC3Q9UQE7 1217 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 DMDP11532 3685 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 CFAP54Q96N23 3096 aa13.51□□□□□ -0.25
TPM3-204ENST00000323144 K7ENM7 598 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 TOM1L1O75674 476 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 CEBPBP17676 345 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 PLCG1P19174 1290 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 GUCY2FP51841 1108 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 STRN3Q13033 797 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 DHX8Q14562 1220 aaKnown RBP13.5□□□□□ -0.25
TPM3-204ENST00000323144 KARSQ15046 597 aaKnown RBP13.5□□□□□ -0.25
TPM3-204ENST00000323144 SLC10A6Q3KNW5 377 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 PABPC1LQ4VXU2 614 aaKnown RBP13.5□□□□□ -0.25
TPM3-204ENST00000323144 POTEHQ6S545 545 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 ANKS3Q6ZW76 656 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 FRMD5Q7Z6J6 570 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 FGF13Q92913 245 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 ACAP3Q96P50 834 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 TCHPQ9BT92 498 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 FOXQ1Q9C009 403 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 C17orf75Q9HAS0 396 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 BLOC1S4Q9NUP1 217 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 SLC38A7Q9NVC3 462 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.5□□□□□ -0.253e-11■□□□□ 9
TPM3-204ENST00000323144 DNMT3BQ9UBC3 853 aaKnown RBP13.5□□□□□ -0.25
TPM3-204ENST00000323144 BACE2Q9Y5Z0 518 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 SCN1AP35498 2009 aa13.5□□□□□ -0.25
TPM3-204ENST00000323144 VPS37CA5D8V6 355 aaPredicted RBP13.49□□□□□ -0.25
TPM3-204ENST00000323144 PRR23AA6NEV1 266 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 FAM189A1O60320 539 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 XYLBO75191 536 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 POU2F2P09086 479 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 MCM4P33991 863 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 NUBP1P53384 320 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 ARPP19P56211 112 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 MCL1Q07820 350 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 ARL6IP4Q66PJ3 421 aaKnown RBP13.49□□□□□ -0.25
TPM3-204ENST00000323144 SLC8B1Q6J4K2 584 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 SLC39A4Q6P5W5 647 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 BICD1Q96G01 975 aa13.49□□□□□ -0.25
TPM3-204ENST00000323144 RBM19Q9Y4C8 960 aaKnown RBP13.49□□□□□ -0.25
TPM3-204ENST00000323144 NCANO14594 1321 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 TISP43B9A030 160 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 PPEF2O14830 753 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 TBC1D4O60343 1298 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 LRRN2O75325 713 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 SEC24AO95486 1093 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 RHOP08100 348 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 RFX1P22670 979 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 NBL1P41271 181 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 MATR3P43243 847 aaKnown RBP eCLIP13.48□□□□□ -0.25
TPM3-204ENST00000323144 MCM6Q14566 821 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 ANGPT1Q15389 498 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 SPECC1Q5M775 1068 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 ZPBP2Q6X784 338 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 DTWD2Q8NBA8 298 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 SUSD3Q96L08 255 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 IKZF4Q9H2S9 585 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 UPF2Q9HAU5 1272 aaKnown RBP13.48□□□□□ -0.25
TPM3-204ENST00000323144 SLC2A4RGQ9NR83 387 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 WNT16Q9UBV4 365 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 FBXL5Q9UKA1 691 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 ODF2LQ9ULJ1 636 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 NUB1Q9Y5A7 615 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 INSL5Q9Y5Q6 135 aa13.48□□□□□ -0.25
TPM3-204ENST00000323144 PROB1E7EW31 1015 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 HNRNPDLO14979 420 aaKnown RBP13.47□□□□□ -0.25
TPM3-204ENST00000323144 SYN3O14994 580 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 TRAPPC3O43617 180 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 VNN2O95498 520 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 DCNP07585 359 aaKnown RBP13.47□□□□□ -0.25
TPM3-204ENST00000323144 GLULP15104 373 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 LIG4P49917 911 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 ZNF131P52739 623 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 SF3A1Q15459 793 aaKnown RBP13.47□□□□□ -0.25
TPM3-204ENST00000323144 ENOX2Q16206 610 aaKnown RBP13.47□□□□□ -0.25
TPM3-204ENST00000323144 CTXN3Q4LDR2 81 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 ZNF280DQ6N043 979 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 HAUS6Q7Z4H7 955 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 RAD54LQ92698 747 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 TCEAL4Q96EI5 215 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 KIF12Q96FN5 646 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 AK8Q96MA6 479 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 FIZ1Q96SL8 496 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 NTPCRQ9BSD7 190 aaKnown RBP13.47□□□□□ -0.25
TPM3-204ENST00000323144 KCND2Q9NZV8 630 aa13.47□□□□□ -0.25
TPM3-204ENST00000323144 TTC26A0AVF1 554 aa13.46□□□□□ -0.25
TPM3-204ENST00000323144 ARHGEF37A1IGU5 675 aa13.46□□□□□ -0.25
TPM3-204ENST00000323144 STK25O00506 426 aa13.46□□□□□ -0.25
TPM3-204ENST00000323144 PRRG1O14668 218 aa13.46□□□□□ -0.25
TPM3-204ENST00000323144 CLDN3O15551 220 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms