RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ANKEF1Q9NU02 776 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 NUB1Q9Y5A7 615 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 RASGRF2O14827 1237 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 MEFVO15553 781 aaPredicted RBP17.74■□□□□ 0.43
VPS54-201ENST00000272322 GRIN3BO60391 1043 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 FAM107AO95990 144 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 MUTP22033 750 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 WNT8AQ9H1J5 351 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 ZNF302Q9NR11 478 aa17.74■□□□□ 0.43
VPS54-201ENST00000272322 TLR3O15455 904 aaKnown RBP17.73■□□□□ 0.43
VPS54-201ENST00000272322 PLA2G6O60733 806 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 CD19P15391 556 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 MNAT1P51948 309 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 SMTNL2Q2TAL5 461 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 TREML2Q5T2D2 321 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 FKBP1CQ5VVH2 108 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 MCOLN2Q8IZK6 566 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 NLRP4Q96MN2 994 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 SCLT1Q96NL6 688 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 CDC42EP4Q9H3Q1 356 aaKnown RBP17.73■□□□□ 0.43
VPS54-201ENST00000272322 BRD2P25440 801 aaKnown RBP17.73■□□□□ 0.43
VPS54-201ENST00000272322 GPC3P51654 580 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 ALCAMQ13740 583 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 CLEC16AQ2KHT3 1053 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 CCDC121Q6ZUS5 278 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 GLIS1Q8NBF1 620 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 TEX13BQ9BXU2 312 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 INTS9Q9NV88 658 aaKnown RBP17.73■□□□□ 0.43
VPS54-201ENST00000272322 GINS2Q9Y248 185 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 PCDHA3Q9Y5H8 950 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 QSER1Q2KHR3 1735 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 PPFIA2O75334 1257 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 GZMAP12544 262 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 GLRA2P23416 452 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 ITGA8P53708 1063 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 KCNT1Q5JUK3 1230 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 LRIG3Q6UXM1 1119 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 GADL1Q6ZQY3 521 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 SCYL3Q8IZE3 742 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 MTMR12Q9C0I1 747 aa17.73■□□□□ 0.43
VPS54-201ENST00000272322 MROH7Q68CQ1 1323 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 PASKQ96RG2 1323 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 C11orf63Q6NUN7 778 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 ACAD9Q9H845 621 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 SYNPO2Q9UMS6 1093 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.72■□□□□ 0.43
VPS54-201ENST00000272322 DHX34Q14147 1143 aaKnown RBP17.72■□□□□ 0.43
VPS54-201ENST00000272322 TXNRD3NBQ6F5E7 133 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 KCTD17Q8N5Z5 321 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 SEC16BQ96JE7 1060 aa17.72■□□□□ 0.43
VPS54-201ENST00000272322 NOP14P78316 857 aaKnown RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 GNPTABQ3T906 1256 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 FAM133BQ5BKY9 247 aaKnown RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 GJC2Q5T442 439 aaPredicted RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 TJP2Q9UDY2 1190 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 P4HA2O15460 535 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 VNN1O95497 513 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 HMGB2P26583 209 aaKnown RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 MIS18BP1Q6P0N0 1132 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 DCUN1D2Q6PH85 259 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 LRRC34Q8IZ02 419 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 RBBP8NLQ8NC74 664 aaPredicted RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 MCPH1Q8NEM0 835 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 F8VP50 259 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 TRAPPC3O43617 180 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 BANF1O75531 89 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 RFX1P22670 979 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 GTF2H1P32780 548 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 RAP1GAPP47736 663 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 ZNF365Q70YC5 407 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 USP37Q86T82 979 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 HOOK3Q86VS8 718 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 C1orf131Q8NDD1 294 aaKnown RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 LRRN4Q8WUT4 740 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 PRPF31Q8WWY3 499 aaKnown RBP17.71■□□□□ 0.43
VPS54-201ENST00000272322 COPS5Q92905 334 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 MFSD14AQ96MC6 490 aa17.71■□□□□ 0.43
VPS54-201ENST00000272322 FAM187AA6NFU0 413 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 RIPK2O43353 540 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 LYPLA2O95372 231 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 GH1P01241 217 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 CYP1A2P05177 515 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 ABHD15Q6UXT9 468 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 NIPA1Q7RTP0 329 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 RNF149Q8NC42 400 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 CD101Q93033 1021 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 XPO6Q96QU8 1125 aaKnown RBP17.7■□□□□ 0.42
VPS54-201ENST00000272322 ZNF148Q9UQR1 794 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 INO80B-WBP1J3KQ70 363 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 STBD1O95210 358 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 NRLP54845 237 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 CDH8P55286 799 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 MYL6P60660 151 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 NCOA4Q13772 614 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 TTLL12Q14166 644 aaPredicted RBP17.7■□□□□ 0.42
VPS54-201ENST00000272322 MYBPC2Q14324 1141 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 STXBP2Q15833 593 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 CACNA2D3Q8IZS8 1091 aa17.7■□□□□ 0.42
VPS54-201ENST00000272322 IPO4Q8TEX9 1081 aaKnown RBP17.7■□□□□ 0.42
VPS54-201ENST00000272322 ZBED3Q96IU2 234 aaPredicted RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms