RNA–Protein interactions for RNA: ENST00000263121.11

SMARCB1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,690 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-201ENST00000263121 FAM228BP0C875 321 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 VAV2P52735 878 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 DNTTIP2Q5QJE6 756 aaKnown RBP24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 SNX27Q96L92 541 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 IMPG2Q9BZV3 1241 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 LZTFL1Q9NQ48 299 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 ST3GAL5Q9UNP4 418 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 NUB1Q9Y5A7 615 aa24.63■■□□□ 1.53
SMARCB1-201ENST00000263121 TUBB4AP04350 444 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 CCL5P13501 91 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 MYL6P60660 151 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 TMEM132DQ14C87 1099 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 C1orf127Q8N9H9 656 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 JAKMIP2Q96AA8 810 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 ADAMTS1Q9UHI8 967 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 HES2Q9Y543 173 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 PCDHA13Q9Y5I0 950 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 ARVCFO00192 962 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 TRPC3Q13507 836 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 CUL2Q13617 745 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 SGSM1Q2NKQ1 1148 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 FBXO47Q5MNV8 452 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 KIAA1328Q86T90 577 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 CXorf38Q8TB03 319 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 DEFB118Q96PH6 123 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 ARID3AQ99856 593 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 IFIH1Q9BYX4 1025 aaKnown RBP24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 XYLT2Q9H1B5 865 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 TRPV6Q9H1D0 765 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 SIX4Q9UIU6 781 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 OGDHLQ9ULD0 1010 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 NENFQ9UMX5 172 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 DERAQ9Y315 318 aa24.62■■□□□ 1.53
SMARCB1-201ENST00000263121 UMODL1Q5DID0 1318 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 RCCD1A6NED2 376 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 ABL1P00519 1130 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 TBXAS1P24557 533 aaPredicted RBP24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 YARSP54577 528 aaKnown RBP24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 BMS1Q14692 1282 aaKnown RBP24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 ARHGAP29Q52LW3 1261 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 ALKAL1Q6UXT8 129 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 PDZRN4Q6ZMN7 1036 aaPredicted RBP24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 SEZ6LQ9BYH1 1024 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 AGO3Q9H9G7 860 aaKnown RBP24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 ERVK-5Q9HDB9 667 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 CHST12Q9NRB3 414 aa24.61■■□□□ 1.53
SMARCB1-201ENST00000263121 GPR182O15218 404 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 RECQL4O94761 1208 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 ETF1P62495 437 aaKnown RBP24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 VPS36Q86VN1 386 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 SMG8Q8ND04 991 aaKnown RBP24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 OSBPL7Q9BZF2 842 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 CNTN3Q9P232 1028 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 TFR2Q9UP52 801 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 IPPQ9Y573 584 aa24.6■■□□□ 1.53
SMARCB1-201ENST00000263121 DDX3XO00571 662 aaKnown RBP eCLIP24.59■■□□□ 1.539e-12■■■■□ 22.2
SMARCB1-201ENST00000263121 ACO1P21399 889 aaKnown RBP24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 USP8P40818 1118 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 MAGEA1P43355 309 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 TWF2Q6IBS0 349 aaKnown RBP24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 SLC30A5Q8TAD4 765 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 TAF4BQ92750 862 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 LACRTQ9GZZ8 138 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 RNF208Q9H0X6 261 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 CXCL16Q9H2A7 254 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 SQORQ9Y6N5 450 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 DNAH12Q6ZR08 3092 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 CYP26A1O43174 497 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 MYCP01106 439 aaPredicted RBP24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 CDK7P50613 346 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 NFX1Q12986 1120 aaKnown RBP24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 LPIN1Q14693 890 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 ZNF699Q32M78 642 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 XKR4Q5GH76 650 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 ZNF618Q5T7W0 954 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 LNX1Q8TBB1 728 aaPredicted RBP24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 KIF12Q96FN5 646 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 ZMAT2Q96NC0 199 aaKnown RBP24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 NIF3L1Q9GZT8 377 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 NAGPAQ9UK23 515 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 ITGA11Q9UKX5 1188 aa24.59■■□□□ 1.53
SMARCB1-201ENST00000263121 PDCD11Q14690 1871 aaKnown RBP24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 PJA2O43164 708 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 ITGB3P05106 788 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 CKBP12277 381 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 ZBTB6Q15916 424 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 TRAF7Q6Q0C0 670 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 TMEM130Q8N3G9 435 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 UBR7Q8N806 425 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 EPS8L1Q8TE68 723 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 RNF39Q9H2S5 420 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 TRIM10Q9UDY6 481 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 NOCTQ9UK39 431 aaKnown RBP24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 PADI3Q9ULW8 664 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 CNTN6Q9UQ52 1028 aa24.58■■□□□ 1.53
SMARCB1-201ENST00000263121 SGPL1O95470 568 aa24.57■■□□□ 1.52
SMARCB1-201ENST00000263121 GHRP10912 638 aa24.57■■□□□ 1.52
SMARCB1-201ENST00000263121 AKAP5P24588 427 aa24.57■■□□□ 1.52
SMARCB1-201ENST00000263121 CD52P31358 61 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms