RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	YCR025C	P25352	136 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	BMH1	P29311	267 aa	Known RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	TRR1	P29509	319 aa	Known RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	NTF2	P33331	125 aa	Known RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	TIP20	P33891	701 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	PRX1	P34227	261 aa	Known RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	DBP7	P36120	742 aa	Known RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	SKG1	P36169	355 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	HMT1	P38074	348 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	YBR096W	P38256	230 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	ARN2	P38724	620 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	MTW1	P39731	289 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	AST2	P39945	430 aa	Known RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	YFL012W	P43580	148 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	MRH4	P53166	561 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	PDR17	P53844	350 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	RTC4	P53850	401 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	MRPS16	Q02608	121 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	SDC1	Q03323	175 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	YDR248C	Q03786	193 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	RRP17	Q04031	235 aa	Predicted RBP	1.13	□□□□□ -2.23
VPS55	YJR044C	YML096W	Q04489	525 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	GRE1	Q08969	168 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	YPS3	Q12303	508 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	EMP46	Q12396	444 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	YAL067W-A	Q8TGK6	75 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	IGO2	Q9P305	131 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	SWI1	P09547	1314 aa		1.13	□□□□□ -2.23
VPS55	YJR044C	PAN1	P32521	1480 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	TPI1	P00942	248 aa	Known RBP	1.12	□□□□□ -2.23
VPS55	YJR044C	SPT3	P06844	337 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	MET2	P08465	486 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	PUT1	P09368	476 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	CKA2	P19454	339 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	ADE1	P27616	306 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	EHD3	P28817	500 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	RNP1	P32385	249 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	SFC1	P33303	322 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	APS1	P35181	156 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	CSG2	P35206	410 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	MID2	P36027	376 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	SMP1	P38128	452 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YGP1	P38616	354 aa	Known RBP	1.12	□□□□□ -2.23
VPS55	YJR044C	YHL044W	P38727	235 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	TIF34	P40217	347 aa	Known RBP	1.12	□□□□□ -2.23
VPS55	YJR044C	PDS1	P40316	373 aa	Predicted RBP	1.12	□□□□□ -2.23
VPS55	YJR044C	POG1	P40473	351 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	CAT5	P41735	233 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YJL028W	P47062	111 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	AIM25	P47140	327 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YJR149W	P47177	404 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	COQ5	P49017	307 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	PRM8	P53174	237 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YOL019W	Q08157	551 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YOR186W	Q08560	144 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YPL257W	Q08974	193 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YDL211C	Q12121	372 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	YDR018C	Q12185	396 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	IES3	Q12345	250 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	BBP1	Q12365	385 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	DFM1	Q12743	341 aa	Known RBP	1.12	□□□□□ -2.23
VPS55	YJR044C	LSO2	Q3E772	92 aa	Known RBP	1.12	□□□□□ -2.23
VPS55	YJR044C	YOR020W-A	Q3E824	90 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	ISD11	Q6Q560	94 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	HTL1	Q9URQ5	78 aa		1.12	□□□□□ -2.23
VPS55	YJR044C	ADH3	P07246	375 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	RPS28B	P0C0X0	67 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	YPR170W-B	P0C5R9	85 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	DSF1	P0CX08	502 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YNR073C	P0CX09	502 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	1.11	□□□□□ -2.23	not detected
VPS55	YJR044C	FCY2	P17064	533 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	SEC22	P22214	214 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	SEC14	P24280	304 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	TAH1	P25638	111 aa	Predicted RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	OAC1	P32332	324 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	PTM1	P32857	523 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YKL075C	P36083	450 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	MRPL28	P36527	147 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YBL081W	P38180	368 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	ECM33	P38248	429 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	AME1	P38313	324 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YAP3	P38749	330 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	DOG2	P38773	246 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	DOG1	P38774	246 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	TRR2	P38816	342 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	ECM14	P38836	430 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	TEM1	P38987	245 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YAR068W	P39564	161 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	BDH1	P39714	382 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	SYS1	P41544	203 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	UFE1	P41834	346 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	ECO1	P43605	281 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YJR141W	P47172	347 aa	Predicted RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	ALG9	P53868	555 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	ABF2	Q02486	183 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	SNO1	Q03144	224 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YDR476C	Q03362	224 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	MAK3	Q03503	176 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YMR166C	Q03829	368 aa		1.11	□□□□□ -2.23

Retrieved 100 of 5,963 RNA–protein pairs in 19.3 ms