RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YGP1P38616 354 aaKnown RBP2.32□□□□□ -2.04
UPF3YGR072W COS8P38723 381 aa2.32□□□□□ -2.04
UPF3YGR072W YNL194CP40169 301 aa2.32□□□□□ -2.04
UPF3YGR072W HAM1P47119 197 aaKnown RBP2.32□□□□□ -2.04
UPF3YGR072W NUP57P48837 541 aa2.32□□□□□ -2.04
UPF3YGR072W BRR6P53062 197 aa2.32□□□□□ -2.04
UPF3YGR072W YMR114CQ04471 368 aaKnown RBP2.32□□□□□ -2.04
UPF3YGR072W FAR8Q05040 523 aa2.32□□□□□ -2.04
UPF3YGR072W SSQ1Q05931 657 aaPredicted RBP2.32□□□□□ -2.04
UPF3YGR072W YPL257WQ08974 193 aa2.32□□□□□ -2.04
UPF3YGR072W YRA1Q12159 226 aaKnown RBP2.32□□□□□ -2.04
UPF3YGR072W TPO4Q12256 659 aa2.32□□□□□ -2.04
UPF3YGR072W DRS2P39524 1355 aa2.32□□□□□ -2.04
UPF3YGR072W CCH1P50077 2039 aa2.32□□□□□ -2.04
UPF3YGR072W ADH3P07246 375 aaKnown RBP2.31□□□□□ -2.04
UPF3YGR072W ERD2P18414 219 aa2.31□□□□□ -2.04
UPF3YGR072W SEC22P22214 214 aa2.31□□□□□ -2.04
UPF3YGR072W RSA4P25382 515 aaKnown RBP2.31□□□□□ -2.04
UPF3YGR072W RCN1P36054 211 aa2.31□□□□□ -2.04
UPF3YGR072W YJR141WP47172 347 aaPredicted RBP2.31□□□□□ -2.04
UPF3YGR072W YJR149WP47177 404 aa2.31□□□□□ -2.04
UPF3YGR072W MDM34P53083 459 aa2.31□□□□□ -2.04
UPF3YGR072W YGL034CP53186 121 aa2.31□□□□□ -2.04
UPF3YGR072W CUS2P53830 285 aaPredicted RBP2.31□□□□□ -2.04
UPF3YGR072W FCF1Q05498 189 aaPredicted RBP2.31□□□□□ -2.04
UPF3YGR072W YLR179CQ06252 201 aaKnown RBP2.31□□□□□ -2.04
UPF3YGR072W YPR172WQ06608 200 aa2.31□□□□□ -2.04
UPF3YGR072W GET4Q12125 312 aa2.31□□□□□ -2.04
UPF3YGR072W GEP5Q12393 293 aa2.31□□□□□ -2.04
UPF3YGR072W NOT5Q12514 560 aaPredicted RBP2.31□□□□□ -2.04
UPF3YGR072W HTL1Q9URQ5 78 aa2.31□□□□□ -2.04
UPF3YGR072W SWI1P09547 1314 aa2.31□□□□□ -2.04
UPF3YGR072W JIP3O13555 125 aa2.3□□□□□ -2.04
UPF3YGR072W YPR096CO13587 100 aa2.3□□□□□ -2.04
UPF3YGR072W RAD10P06838 210 aa2.3□□□□□ -2.04
UPF3YGR072W AGA2P32781 87 aa2.3□□□□□ -2.04
UPF3YGR072W OST2P46964 130 aa2.3□□□□□ -2.04
UPF3YGR072W IRC18P47056 224 aa2.3□□□□□ -2.04
UPF3YGR072W ADO1P47143 340 aaKnown RBP2.3□□□□□ -2.04
UPF3YGR072W ALG13P53178 202 aa2.3□□□□□ -2.04
UPF3YGR072W ABF2Q02486 183 aa2.3□□□□□ -2.04
UPF3YGR072W INM2Q05533 292 aa2.3□□□□□ -2.04
UPF3YGR072W PRM7Q12459 698 aa2.3□□□□□ -2.04
UPF3YGR072W LSO2Q3E772 92 aaKnown RBP2.3□□□□□ -2.04
UPF3YGR072W YOR020W-AQ3E824 90 aa2.3□□□□□ -2.04
UPF3YGR072W SIR4P11978 1358 aa2.3□□□□□ -2.04
UPF3YGR072W COX5AP00424 153 aa2.29□□□□□ -2.04
UPF3YGR072W MET2P08465 486 aa2.29□□□□□ -2.04
UPF3YGR072W RPL27AP0C2H6 136 aaKnown RBP2.29□□□□□ -2.04
UPF3YGR072W RPL27BP0C2H7 136 aaKnown RBP2.29□□□□□ -2.04
UPF3YGR072W MATALPHA2P0CY08 210 aa2.29□□□□□ -2.04
UPF3YGR072W HMLALPHA2P0CY09 210 aa2.29□□□□□ -2.04
UPF3YGR072W ERG24P32462 438 aaKnown RBP2.29□□□□□ -2.04
UPF3YGR072W PRX1P34227 261 aaKnown RBP2.29□□□□□ -2.04
UPF3YGR072W CAT5P41735 233 aa2.29□□□□□ -2.04
UPF3YGR072W CWC23P52868 283 aaPredicted RBP2.29□□□□□ -2.04
UPF3YGR072W MGA1P53050 456 aa2.29□□□□□ -2.04
UPF3YGR072W YGL088WP53151 121 aa2.29□□□□□ -2.04
UPF3YGR072W YMD8Q03697 442 aa2.29□□□□□ -2.04
UPF3YGR072W YML096WQ04489 525 aa2.29□□□□□ -2.04
UPF3YGR072W ATG38Q05789 226 aaKnown RBP2.29□□□□□ -2.04
UPF3YGR072W BBP1Q12365 385 aa2.29□□□□□ -2.04
UPF3YGR072W SAC3P46674 1301 aa2.28□□□□□ -2.04
UPF3YGR072W HTB1P02293 131 aaKnown RBP2.28□□□□□ -2.04
UPF3YGR072W HTB2P02294 131 aa2.28□□□□□ -2.04
UPF3YGR072W CBF1P17106 351 aa2.28□□□□□ -2.04
UPF3YGR072W IKI1P38874 309 aa2.28□□□□□ -2.04
UPF3YGR072W FIS1P40515 155 aa2.28□□□□□ -2.04
UPF3YGR072W GON7P46984 123 aa2.28□□□□□ -2.04
UPF3YGR072W BXI1P48558 297 aa2.28□□□□□ -2.04
UPF3YGR072W YGL159WP53110 370 aa2.28□□□□□ -2.04
UPF3YGR072W SYF2P53277 215 aaPredicted RBP2.28□□□□□ -2.04
UPF3YGR072W GTR2P53290 341 aa2.28□□□□□ -2.04
UPF3YGR072W FEX1Q08913 375 aa2.28□□□□□ -2.04
UPF3YGR072W FEX2Q08991 375 aa2.28□□□□□ -2.04
UPF3YGR072W SAS5Q99314 248 aa2.28□□□□□ -2.04
UPF3YGR072W YDR157WA0A023PZE8 133 aa2.27□□□□□ -2.05
UPF3YGR072W SGA1P08019 549 aa2.27□□□□□ -2.05
UPF3YGR072W MGM101P32787 269 aaKnown RBP2.27□□□□□ -2.05
UPF3YGR072W YKR032WP36127 104 aa2.27□□□□□ -2.05
UPF3YGR072W MSA2P36157 363 aa2.27□□□□□ -2.05
UPF3YGR072W PEX17P40155 199 aa2.27□□□□□ -2.05
UPF3YGR072W TIF34P40217 347 aaKnown RBP2.27□□□□□ -2.05
UPF3YGR072W ARC15P40518 154 aaRIP-Chip data2.27□□□□□ -2.05not detected
UPF3YGR072W GET1P53192 235 aa2.27□□□□□ -2.05
UPF3YGR072W DID2P69771 204 aa2.27□□□□□ -2.05
UPF3YGR072W YMR279CQ03263 540 aa2.27□□□□□ -2.05
UPF3YGR072W YLR030WQ07967 263 aa2.27□□□□□ -2.05
UPF3YGR072W ABP140Q08641 628 aaKnown RBP2.27□□□□□ -2.05
UPF3YGR072W AGC1Q12482 902 aa2.27□□□□□ -2.05
UPF3YGR072W CDC28P00546 298 aaKnown RBP2.26□□□□□ -2.05
UPF3YGR072W DSF1P0CX08 502 aa2.26□□□□□ -2.05
UPF3YGR072W YNR073CP0CX09 502 aa2.26□□□□□ -2.05
UPF3YGR072W GCN3P14741 305 aa2.26□□□□□ -2.05
UPF3YGR072W FCY2P17064 533 aa2.26□□□□□ -2.05
UPF3YGR072W YPT52P36018 234 aaKnown RBP2.26□□□□□ -2.05
UPF3YGR072W YAR068WP39564 161 aa2.26□□□□□ -2.05
UPF3YGR072W FAR7P43592 221 aa2.26□□□□□ -2.05
UPF3YGR072W TOS8P53147 276 aa2.26□□□□□ -2.05
UPF3YGR072W ERV29P53337 310 aa2.26□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 21.5 ms