RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SSH3Q8TE77 659 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RFKQ969G6 155 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NOX5Q96PH1 765 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 IMPG2Q9BZV3 1241 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MKNK2Q9HBH9 465 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TIMMDC1Q9NPL8 285 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 STON1Q9Y6Q2 735 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 KRBA1A5PL33 1030 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TTI1O43156 1089 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 POLR2MP0CAP2 368 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ATF6P18850 670 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SSTR3P32745 418 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NUP107P57740 925 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 BEX3Q00994 111 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CYLC2Q14093 348 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 COG2Q14746 738 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CLEC2AQ6UVW9 174 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 LRRTM3Q86VH5 581 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MYCBPAPQ8TBZ2 947 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NELL2Q99435 816 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RNF38Q9H0F5 515 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SLITRK6Q9H5Y7 841 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CYP4F11Q9HBI6 524 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SEPT3Q9UH03 358 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 L1RE1Q9UN81 338 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 INTS1Q8N201 2190 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NUPL2O15504 423 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SORBS3O60504 671 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GLRX3O76003 335 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 OXSR1O95747 527 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 F13A1P00488 732 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ATP4AP20648 1035 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MZF1P28698 734 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CLCA4Q14CN2 919 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 KLHL38Q2WGJ6 581 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CAVIN4Q5BKX8 364 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SCARA3Q6AZY7 606 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 UTS2BQ765I0 119 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 BEND5Q7L4P6 421 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RD3Q7Z3Z2 195 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 BANPQ8N9N5 519 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 UHRF1Q96T88 793 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 SSX3Q99909 188 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GON7Q9BXV9 100 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 C16orf96A6NNT2 1141 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 IGF2BP3O00425 579 aaKnown RBP eCLIP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 TXNDC9O14530 226 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CSF1RP07333 972 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ABCB4P21439 1286 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CLCN6P51797 869 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ARPP19P56211 112 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 CBLBQ13191 982 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 OSTM1Q86WC4 334 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 NUDT13Q86X67 352 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 DDX54Q8TDD1 881 aaKnown RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 ADIPOR1Q96A54 375 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 AIDAQ96BJ3 306 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 PRRG3Q9BZD7 231 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 RNPEPQ9H4A4 650 aa3.77□□□□□ -1.81
SCN1A-221ENST00000641996 MBD1Q9UIS9 605 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-221ENST00000641996 GTPBP1O00178 669 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CCRL2O00421 344 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SRGNP10124 158 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 RARGP13631 454 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GARTP22102 1010 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DPP6P42658 865 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 INHBEP58166 350 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GNGT1P63211 74 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DOC2AQ14183 400 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CLPPQ16740 277 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ATG16L1Q676U5 607 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ZNF530Q6P9A1 599 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AGMOQ6ZNB7 445 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 BBS7Q8IWZ6 715 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 FAM20CQ8IXL6 584 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 SPICE1Q8N0Z3 855 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GPR156Q8NFN8 814 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 LRRC20Q8TCA0 184 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AIFM2Q9BRQ8 373 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TREM1Q9NP99 234 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 DBNLQ9UJU6 430 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GGA2Q9UJY4 613 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 TRIOBPQ9H2D6 2365 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 AHCTF1Q8WYP5 2266 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 M0QX08 132 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ENSAO43768 121 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ZBTB14O43829 449 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ARFIP2P53365 341 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PHEXP78562 749 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 PCID2Q5JVF3 399 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 MTMR14Q8NCE2 650 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 FRMD6Q96NE9 622 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CERS4Q9HA82 394 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 STIM2Q9P246 746 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 A0A1W2PQ72 361 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CLRN2A0PK11 232 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CLASP2O75122 1294 aaKnown RBP3.76□□□□□ -1.81
SCN1A-221ENST00000641996 GRIK1P39086 918 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 ZAP70P43403 619 aa3.76□□□□□ -1.81
SCN1A-221ENST00000641996 CHAF1BQ13112 559 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms