RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 IL23AQ9NPF7 189 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 C2CD2Q9Y426 696 aa22.27■■□□□ 1.16
CLN3-245ENST00000636172 EOMESO95936 686 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 C4BPAP04003 597 aaKnown RBP22.26■■□□□ 1.15
CLN3-245ENST00000636172 ACRP10323 421 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 PBX1P40424 430 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 MLH1P40692 756 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 TFAMQ00059 246 aaKnown RBP22.26■■□□□ 1.15
CLN3-245ENST00000636172 TMEM132DQ14C87 1099 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 SV2AQ7L0J3 742 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 DPF3Q92784 378 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 GAD1Q99259 594 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 MTMR12Q9C0I1 747 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 RSAD1Q9HA92 442 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 RNF19AQ9NV58 838 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 TMEM161AQ9NX61 479 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 ZMYND8Q9ULU4 1186 aaPredicted RBP22.26■■□□□ 1.15
CLN3-245ENST00000636172 PDE4DIPQ5VU43 2346 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 PTGESO14684 152 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 PMM2O15305 246 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 N4BP1O75113 896 aaKnown RBP22.26■■□□□ 1.15
CLN3-245ENST00000636172 KCNE1P15382 129 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 AP3M2P53677 418 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 FPGSQ05932 587 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 PPIGQ13427 754 aaKnown RBP eCLIP22.26■■□□□ 1.156e-7■■□□□ 11.8
CLN3-245ENST00000636172 DUOXA2Q1HG44 320 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 GLRA4Q5JXX5 417 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 TDRD10Q5VZ19 366 aaKnown RBP22.26■■□□□ 1.15
CLN3-245ENST00000636172 KRT39Q6A163 491 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 GSTCDQ8NEC7 633 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 KIF12Q96FN5 646 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 ERGIC2Q96RQ1 377 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 CRACR2AQ9BSW2 395 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 ELAC1Q9H777 363 aaKnown RBP22.26■■□□□ 1.15
CLN3-245ENST00000636172 UBN1Q9NPG3 1134 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 DERAQ9Y315 318 aa22.26■■□□□ 1.15
CLN3-245ENST00000636172 SMIM28A0A1B0GU29 152 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 GTPBP10A4D1E9 387 aaKnown RBP22.25■■□□□ 1.15
CLN3-245ENST00000636172 ARL5CA6NH57 179 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 P4HA2O15460 535 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 AFF1P51825 1210 aaKnown RBP22.25■■□□□ 1.15
CLN3-245ENST00000636172 SYCP1Q15431 976 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 ZACNQ401N2 412 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.25■■□□□ 1.15
CLN3-245ENST00000636172 C16orf59Q7L2K0 433 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 NT5DC4Q86YG4 428 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 CRIPAKQ8N1N5 446 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 SIK3Q9Y2K2 1263 aa22.25■■□□□ 1.15
CLN3-245ENST00000636172 ABHD14A-ACY1A0A1B0GW23 586 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 A0A1W2PQC6 194 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 TMEM191BP0C7N4 346 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 KCNMA1Q12791 1236 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 ZBTB6Q15916 424 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 EPC2Q52LR7 807 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 CLLU1OSQ5K130 101 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 VSTM4Q8IW00 320 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 TMEM130Q8N3G9 435 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 TAS1R2Q8TE23 839 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 ANKRD36BP1Q96IX9 119 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 TSPAN18Q96SJ8 248 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 PLAGL2Q9UPG8 496 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 COQ4Q9Y3A0 265 aa22.24■■□□□ 1.15
CLN3-245ENST00000636172 INPPL1O15357 1258 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 OFD1O75665 1012 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 TNNC2P02585 160 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 FGFR1P11362 822 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 CDC25BP30305 580 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 KLK7P49862 253 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 BIRC3Q13489 604 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 EXOC3L4Q17RC7 722 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 SCARA3Q6AZY7 606 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 GBP6Q6ZN66 633 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 TRAPPC11Q7Z392 1133 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 CACTINQ8WUQ7 758 aaKnown RBP22.23■■□□□ 1.15
CLN3-245ENST00000636172 C18orf25Q96B23 403 aaPredicted RBP22.23■■□□□ 1.15
CLN3-245ENST00000636172 PPP1R10Q96QC0 940 aaKnown RBP22.23■■□□□ 1.15
CLN3-245ENST00000636172 RPS6KC1Q96S38 1066 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 GCNT4Q9P109 453 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 TUBGCP4Q9UGJ1 667 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 PCDHB7Q9Y5E2 793 aa22.23■■□□□ 1.15
CLN3-245ENST00000636172 VNN1O95497 513 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 SCNN1GP51170 649 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 GUCY2FP51841 1108 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 EPHB4P54760 987 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 C1orf127Q8N9H9 656 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 FBXL13Q8NEE6 735 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 LMO3Q8TAP4 145 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 SEMA4DQ92854 862 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 MIOSQ9NXC5 875 aa22.22■■□□□ 1.15
CLN3-245ENST00000636172 TDRD15B5MCY1 1934 aaKnown RBP22.22■■□□□ 1.15
CLN3-245ENST00000636172 EFCAB14O75071 495 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 LRRN2O75325 713 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 BAIAP3O94812 1187 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 HLA-DRAP01903 254 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 ACTN1P12814 892 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 PON1P27169 355 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 WDR5P61964 334 aaKnown RBP22.21■■□□□ 1.15
CLN3-245ENST00000636172 CETN1Q12798 172 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 GLB1LQ6UWU2 654 aa22.21■■□□□ 1.15
CLN3-245ENST00000636172 NPAS4Q8IUM7 802 aa22.21■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms