RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 ZNF394Q53GI3 561 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 CIAPIN1Q6FI81 312 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 USP37Q86T82 979 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 VTI1AQ96AJ9 217 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 KIAA1683Q9H0B3 1180 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 EFCC1Q9HA90 598 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 ANKEF1Q9NU02 776 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 UVRAGQ9P2Y5 699 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 R3HDM2Q9Y2K5 976 aaKnown RBP13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 KIF13BQ9NQT8 1826 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 COL4A5P29400 1685 aa13.81□□□□□ -0.2
CCDC88A-214ENST00000621814 NUDT17P0C025 328 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 CCND2P30279 289 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 POLGP54098 1239 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 SIX1Q15475 284 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 ZBTB41Q5SVQ8 909 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 C6orf118Q5T5N4 469 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 SCARA3Q6AZY7 606 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 GSTA5Q7RTV2 222 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 CDC42EP4Q9H3Q1 356 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 CNOT10Q9H9A5 744 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 RALAP11233 206 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 FNTAP49354 379 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 DRG2P55039 364 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 ERMARDQ5T6L9 678 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 SEPT14Q6ZU15 432 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 LRRC34Q8IZ02 419 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 MCOLN2Q8IZK6 566 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 AGBL3Q8NEM8 1001 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 ATP6V0A1Q93050 837 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 MRRFQ96E11 262 aaKnown RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 PLVAPQ9BX97 442 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 JPH1Q9HDC5 661 aaPredicted RBP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 PGAP2Q9UHJ9 254 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 PCDHB4Q9Y5E5 795 aa13.8□□□□□ -0.2
CCDC88A-214ENST00000621814 PI4K2BG5E9Z4 385 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 DRD4P21917 467 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ITGA8P53708 1063 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ACTN3Q08043 901 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 SLMAPQ14BN4 828 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 BRDTQ58F21 947 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 CAPN12Q6ZSI9 719 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 VSIG10LQ86VR7 867 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 GDAP1Q8TB36 358 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ART4Q93070 314 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 MFSD14AQ96MC6 490 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 SCLT1Q96NL6 688 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ADAM33Q9BZ11 813 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 FAM129AQ9BZQ8 928 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ST6GALNAC4Q9H4F1 302 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 XPNPEP1Q9NQW7 623 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 COL2A1P02458 1487 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 GSTTP1A0A1W2PQM5 241 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 GGPS1O95749 300 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 HLA-DRAP01903 254 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 PSAPP07602 524 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 RARGP13631 454 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ADCY2Q08462 1091 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 STRN3Q13033 797 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ATP13A4Q4VNC1 1196 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ACSF2Q96CM8 615 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ZNF668Q96K58 619 aaPredicted RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 DEFB129Q9H1M3 183 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 CYP26B1Q9NR63 512 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 HAUS2Q9NVX0 235 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 MROH7Q68CQ1 1323 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 THAP12O43422 761 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 RGS20O76081 388 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ACTR2P61160 394 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 AUHQ13825 339 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 FAM133BQ5BKY9 247 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 FKBP1CQ5VVH2 108 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 C6orf89Q6UWU4 347 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 TAS1R3Q7RTX0 852 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 IPO4Q8TEX9 1081 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 PSPC1Q8WXF1 523 aaKnown RBP13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 TEPSINQ96N21 525 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ADAM7Q9H2U9 754 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 ATP6V0A4Q9HBG4 840 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 CD248Q9HCU0 757 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 SLC9A2Q9UBY0 812 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 PTPRJQ12913 1337 aa13.79□□□□□ -0.2
CCDC88A-214ENST00000621814 FSBPO95073 299 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 TDRD10Q5VZ19 366 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 TEX2Q8IWB9 1127 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 HAUS1Q96CS2 278 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 PGM2Q96G03 612 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 C9orf72Q96LT7 481 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 WRNIP1Q96S55 665 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 TCHPQ9BT92 498 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 TIPINQ9BVW5 301 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 TARS2Q9BW92 718 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 ADAM22Q9P0K1 906 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 AGO2Q9UKV8 859 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 COQ4Q9Y3A0 265 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 MAPK13O15264 365 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 DGAT1O75907 488 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 KCNA3P22001 575 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms