RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 GBP7Q8N8V2 638 aaPredicted RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 STMN2Q93045 179 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 HES6Q96HZ4 224 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 ADAM33Q9BZ11 813 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 ACAD9Q9H845 621 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 TMEM120BA0PK00 339 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 INHBAP08476 426 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 RARGP13631 454 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 RRM1P23921 792 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 YARSP54577 528 aaKnown RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 NOP9Q86U38 636 aaKnown RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 PARP9Q8IXQ6 854 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 RBBP8NLQ8NC74 664 aaPredicted RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 TATDN2Q93075 761 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 RBM15Q96T37 977 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIG4-204ENST00000611712 MYCBPQ99417 103 aaPredicted RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 PARVAQ9NVD7 372 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PCDHA2Q9Y5H9 948 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 I3L4J1 428 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 TULP2O00295 520 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 MCF2LO15068 1137 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 RPL21P46778 160 aaKnown RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 ARSEP51690 589 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 ITGB3BPQ13352 177 aaPredicted RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 TFDP1Q14186 410 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 NEDD9Q14511 834 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 SPARCL1Q14515 664 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 MAPK6Q16659 721 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 DALRD3Q5D0E6 543 aaKnown RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 BSPRYQ5W0U4 402 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 SH3BP5LQ7L8J4 393 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 C4orf19Q8IY42 314 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 LRRC34Q8IZ02 419 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PDIK1LQ8N165 341 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PPP1R16BQ96T49 567 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 SH3GL2Q99962 352 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.23□□□□□ -0.93
LIG4-204ENST00000611712 HOXC10Q9NYD6 342 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PIM2Q9P1W9 311 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 IGSF9BQ9UPX0 1349 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 FRMD3A2A2Y4 597 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 CDH16O75309 829 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 SPAG7O75391 227 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 ITGB5P18084 799 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 ZNF699Q32M78 642 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 P3H1Q32P28 736 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PRAMEF18Q5VWM3 479 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 SYDE1Q6ZW31 735 aaPredicted RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 ZBED8Q8IZ13 594 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PDCD2LQ9BRP1 358 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 TARS2Q9BW92 718 aaKnown RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 GLIS2Q9BZE0 524 aaPredicted RBP9.23□□□□□ -0.93
LIG4-204ENST00000611712 FGFR1OP2Q9NVK5 253 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 PCSK1NQ9UHG2 260 aa9.23□□□□□ -0.93
LIG4-204ENST00000611712 CCT8L1PA6NM43 557 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 MED7O43513 233 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 MT-ND3P03897 115 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 FLT3P36888 993 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 MARCKSL1P49006 195 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 NCOA4Q13772 614 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 KIF22Q14807 665 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 NBPF9Q3BBW0 867 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 PCNX4Q63HM2 1172 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 ZNF449Q6P9G9 518 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 DARS2Q6PI48 645 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 LRRC57Q8N9N7 239 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 ALG3Q92685 438 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 ROPN1BQ9BZX4 212 aaPredicted RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 RANBP17Q9H2T7 1088 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 ROPN1Q9HAT0 212 aaPredicted RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 DDX20Q9UHI6 824 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 MAD1L1Q9Y6D9 718 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 RARAP10276 462 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 FKBP1AP62942 108 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 EN1Q05925 392 aaPredicted RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 PDIA2Q13087 525 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 EMC2Q15006 297 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 ZNF667Q5HYK9 610 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 ZNF572Q7Z3I7 529 aaPredicted RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 TEX2Q8IWB9 1127 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 MAP7D3Q8IWC1 876 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 EPS8L1Q8TE68 723 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 PARD3BQ8TEW8 1205 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 HSPH1Q92598 858 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 TEX13BQ9BXU2 312 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 TRIM6Q9C030 488 aaPredicted RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 SLC40A1Q9NP59 571 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 GINM1Q9NU53 330 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 MAPTP10636 758 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 SNX16P57768 344 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 NOP14P78316 857 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 IFI35P80217 286 aaPredicted RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 STAT4Q14765 748 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 SURF1Q15526 300 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 OR6B2Q6IFH4 312 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 PPFIBP2Q8ND30 876 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 PSPC1Q8WXF1 523 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 CDC42EP4Q9H3Q1 356 aaKnown RBP9.22□□□□□ -0.93
LIG4-204ENST00000611712 MYOZ2Q9NPC6 264 aa9.22□□□□□ -0.93
LIG4-204ENST00000611712 HESX1Q9UBX0 185 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms