RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 POLIQ9UNA4 740 aa6.95□□□□□ -1.3
CUX1-220ENST00000607092 SMG5Q9UPR3 1016 aaKnown RBP6.95□□□□□ -1.3
CUX1-220ENST00000607092 MRPS23Q9Y3D9 190 aaKnown RBP6.95□□□□□ -1.3
CUX1-220ENST00000607092 HES2Q9Y543 173 aa6.95□□□□□ -1.3
CUX1-220ENST00000607092 BACE2Q9Y5Z0 518 aa6.95□□□□□ -1.3
CUX1-220ENST00000607092 DCHS1Q96JQ0 3298 aa6.95□□□□□ -1.3
CUX1-220ENST00000607092 DOCK8Q8NF50 2099 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 ZFYVE26Q68DK2 2539 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 LRRIQ4A6NIV6 560 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 H7C4K7 107 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 ACKR2O00590 384 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 ADAMTS3O15072 1205 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 LRG1P02750 347 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 NEFLP07196 543 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CPA1P15085 419 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 PTPN2P17706 415 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 MUTP22033 750 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 GLRA2P23416 452 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 AKAP5P24588 427 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CNR2P34972 360 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 KRT2P35908 639 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 NAMPTP43490 491 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CCR3P51677 355 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 YARSP54577 528 aaKnown RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 MLLT6P55198 1093 aaPredicted RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 CYP4A11Q02928 519 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 PRPF4BQ13523 1007 aaKnown RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 SNW1Q13573 536 aaKnown RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 DSG2Q14126 1118 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 TRIM29Q14134 588 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CTTNQ14247 550 aaKnown RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 RSPO4Q2I0M5 234 aaPredicted RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 RTP2Q5QGT7 225 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CYP4A22Q5TCH4 519 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CDCA2Q69YH5 1023 aaPredicted RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 LAIR1Q6GTX8 287 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 IQCEQ6IPM2 695 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 PARM1Q6UWI2 310 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 PIK3AP1Q6ZUJ8 805 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 GLYCTKQ8IVS8 523 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CELF5Q8N6W0 485 aaKnown RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 GSTCDQ8NEC7 633 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 LNX1Q8TBB1 728 aaPredicted RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 SLC7A14Q8TBB6 771 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 DEPDC1BQ8WUY9 529 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 HAS1Q92839 578 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 FGF14Q92915 247 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 ELSPBP1Q96BH3 223 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CPB2Q96IY4 423 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 IFT74Q96LB3 600 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 CLSTN3Q9BQT9 956 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 OXCT2Q9BYC2 517 aaPredicted RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 FOXQ1Q9C009 403 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 GPR88Q9GZN0 384 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 POLR3FQ9H1D9 316 aaPredicted RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 FZD8Q9H461 694 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 NXF3Q9H4D5 531 aaKnown RBP6.94□□□□□ -1.3
CUX1-220ENST00000607092 TUFT1Q9NNX1 390 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 TRPV5Q9NQA5 729 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 XPNPEP1Q9NQW7 623 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 RGL1Q9NZL6 768 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 MTRRQ9UBK8 725 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 C2orf16Q68DN1 1984 aa6.94□□□□□ -1.3
CUX1-220ENST00000607092 MTCL1Q9Y4B5 1905 aaKnown RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 MED19A0JLT2 244 aaPredicted RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 SYN3O14994 580 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 NEMFO60524 1076 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 LILRB5O75023 590 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 B3GAT3O94766 335 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 KIF4AO95239 1232 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 RETP07949 1114 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 RPL17P18621 184 aaKnown RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 ATP2B1P20020 1258 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 FGFR3P22607 806 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 OR1D2P34982 312 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 RARRES1P49788 294 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 TOB2Q14106 344 aaPredicted RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 LRRC32Q14392 662 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 SAFBQ15424 915 aaKnown RBP eCLIP6.93□□□□□ -1.3
CUX1-220ENST00000607092 NPY5RQ15761 445 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 TPGS2Q68CL5 300 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 HAUS3Q68CZ6 603 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 TPRG1Q6ZUI0 275 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 NPAS3Q8IXF0 933 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 ZNF461Q8TAF7 563 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 DEPTORQ8TB45 409 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 NETO1Q8TDF5 533 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 NELL1Q92832 810 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 KIFAP3Q92845 792 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 CCDC94Q9BW85 323 aaPredicted RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 TTC12Q9H892 705 aaPredicted RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 BRD9Q9H8M2 597 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 ZFP14Q9HCL3 533 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 PRMT8Q9NR22 394 aaPredicted RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 PDRG1Q9NUG6 133 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 MIOSQ9NXC5 875 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 WRAP73Q9P2S5 460 aaPredicted RBP6.93□□□□□ -1.3
CUX1-220ENST00000607092 USP18Q9UMW8 372 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 KCNJ14Q9UNX9 436 aa6.93□□□□□ -1.3
CUX1-220ENST00000607092 FANCMQ8IYD8 2048 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms