RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 MCRS1Q96EZ8 462 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 CNTNAP3BQ96NU0 1288 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 PPP1R10Q96QC0 940 aaKnown RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 KXD1Q9BQD3 176 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 BCO2Q9BYV7 579 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 CNTNAP3Q9BZ76 1288 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 TRIM6Q9C030 488 aaPredicted RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 EPC1Q9H2F5 836 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 TMEM60Q9H2L4 133 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 TTC12Q9H892 705 aaPredicted RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 PARD6AQ9NPB6 346 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 PRMT8Q9NR22 394 aaPredicted RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 PDRG1Q9NUG6 133 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 PRMT7Q9NVM4 692 aaPredicted RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 SPATA6Q9NWH7 488 aaPredicted RBP6.76□□□□□ -1.33
VRK3-220ENST00000600259 ZSCAN32Q9NX65 697 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 PCDHGA2Q9Y5H1 932 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 BACE2Q9Y5Z0 518 aa6.76□□□□□ -1.33
VRK3-220ENST00000600259 ARHGEF37A1IGU5 675 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 LRRIQ4A6NIV6 560 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 BTBD18B2RXH4 712 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 MEFVO15553 781 aaPredicted RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 MARCH6O60337 910 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 USO1O60763 962 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 XYLBO75191 536 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 MED24O75448 989 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 SEC24AO95486 1093 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 RHOP08100 348 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 CYP11B2P19099 503 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 TKTP29401 623 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 CCR2P41597 374 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 TXKP42681 527 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 CLCNKBP51801 687 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 PFKPQ01813 784 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 SOX4Q06945 474 aaPredicted RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 ADCY1Q08828 1119 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 ELAVL2Q12926 359 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 GAS6Q14393 721 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 UPP1Q16831 310 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 PABPC1LQ4VXU2 614 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 LIN9Q5TKA1 542 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 SLC8B1Q6J4K2 584 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 PDXDC1Q6P996 788 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 MAEAQ7L5Y9 396 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 MAP4K3Q8IVH8 894 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 GPR161Q8N6U8 529 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 ZNF461Q8TAF7 563 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 ING5Q8WYH8 240 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 ELSPBP1Q96BH3 223 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 TCEAL4Q96EI5 215 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 DDX27Q96GQ7 796 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 POLD4Q9HCU8 107 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 TRPV5Q9NQA5 729 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 HEBP1Q9NRV9 189 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 GDE1Q9NZC3 331 aa6.75□□□□□ -1.33
VRK3-220ENST00000600259 ORC3Q9UBD5 711 aaPredicted RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 MRPS23Q9Y3D9 190 aaKnown RBP6.75□□□□□ -1.33
VRK3-220ENST00000600259 USP24Q9UPU5 2620 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 SMIM28A0A1B0GU29 152 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 WDR27A2RRH5 827 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 I3L4J1 428 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 N4BP3O15049 544 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 CDKL5O76039 1030 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 B3GAT3O94766 335 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 MICAL2O94851 1124 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 PRKCBP05771 671 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 CEBPBP17676 345 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 PTPN2P17706 415 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ATP2B1P20020 1258 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 KRT2P35908 639 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 BRCC3P46736 316 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ROR1Q01973 937 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 MTAPQ13126 283 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 PRPF4BQ13523 1007 aaKnown RBP6.74□□□□□ -1.33
VRK3-220ENST00000600259 CALCRLQ16602 461 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ECM1Q16610 540 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 MAPK6Q16659 721 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 WDR44Q5JSH3 913 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 FAM78AQ5JUQ0 283 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ZNF852Q6ZMS4 543 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 TPRG1Q6ZUI0 275 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 TCEAL8Q8IYN2 117 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 MCPH1Q8NEM0 835 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ATRIPQ8WXE1 791 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ZSWIM3Q96MP5 696 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 ZMAT2Q96NC0 199 aaKnown RBP6.74□□□□□ -1.33
VRK3-220ENST00000600259 HINFPQ9BQA5 517 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 POLR3CQ9BUI4 534 aaPredicted RBP6.74□□□□□ -1.33
VRK3-220ENST00000600259 FAM126AQ9BYI3 521 aaPredicted RBP6.74□□□□□ -1.33
VRK3-220ENST00000600259 CHRDQ9H2X0 955 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 GOLGA2P5Q9HBQ8 144 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 PTPRHQ9HD43 1115 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 TUFT1Q9NNX1 390 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 POLIQ9UNA4 740 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 SMG5Q9UPR3 1016 aaKnown RBP6.74□□□□□ -1.33
VRK3-220ENST00000600259 GDAQ9Y2T3 454 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 CDY1Q9Y6F8 540 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 NCANO14594 1321 aa6.74□□□□□ -1.33
VRK3-220ENST00000600259 MAP1BP46821 2468 aaKnown RBP6.73□□□□□ -1.33
VRK3-220ENST00000600259 DCDC2BA2VCK2 349 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms