RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ATOH1Q92858 354 aaPredicted RBP20.53■□□□□ 0.88
PNKP-213ENST00000599543 CDK5RAP3Q96JB5 506 aa20.53■□□□□ 0.88
PNKP-213ENST00000599543 TCHPQ9BT92 498 aa20.53■□□□□ 0.88
PNKP-213ENST00000599543 TARS2Q9BW92 718 aaKnown RBP20.53■□□□□ 0.88
PNKP-213ENST00000599543 GOLGA2P5Q9HBQ8 144 aa20.53■□□□□ 0.88
PNKP-213ENST00000599543 SLC38A7Q9NVC3 462 aa20.53■□□□□ 0.88
PNKP-213ENST00000599543 FAM86C1Q9NVL1 165 aa20.53■□□□□ 0.88
PNKP-213ENST00000599543 VPS13AQ96RL7 3174 aa20.53■□□□□ 0.88
PNKP-213ENST00000599543 ZFHX2Q9C0A1 2572 aaPredicted RBP20.52■□□□□ 0.88
PNKP-213ENST00000599543 SMIM28A0A1B0GU29 152 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 H0Y858 1186 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 SLC16A4O15374 487 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 TRAPPC3O43617 180 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 C8AP07357 584 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 HNRNPA1P09651 372 aaKnown RBP eCLIP20.52■□□□□ 0.88
PNKP-213ENST00000599543 PDCP20941 246 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 GUCY2CP25092 1073 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 CLCN5P51795 746 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 RAD51AP2Q09MP3 1159 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 STRN3Q13033 797 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 PPM1LQ5SGD2 360 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 TAS1R3Q7RTX0 852 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 SIX5Q8N196 739 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 KCTD17Q8N5Z5 321 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 NXPE3Q969Y0 559 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 PTPRHQ9HD43 1115 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 KCNG1Q9UIX4 513 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 MTMR6Q9Y217 621 aa20.52■□□□□ 0.88
PNKP-213ENST00000599543 SFI1A8K8P3 1242 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 NARSO43776 548 aaKnown RBP20.51■□□□□ 0.87
PNKP-213ENST00000599543 MCF2P10911 925 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 LAMP2P13473 410 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 FGFR3P22607 806 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 FSHRP23945 695 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 SMTNP53814 917 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 RESTQ13127 1097 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 HYIQ5T013 277 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 ARL6IP4Q66PJ3 421 aaKnown RBP20.51■□□□□ 0.87
PNKP-213ENST00000599543 MPZL3Q6UWV2 235 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 ACAP3Q96P50 834 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 PLIN2Q99541 437 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 ANKFY1Q9P2R3 1169 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 MTRRQ9UBK8 725 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 POLIQ9UNA4 740 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 MYH15Q9Y2K3 1946 aa20.51■□□□□ 0.87
PNKP-213ENST00000599543 ADAM12O43184 909 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 STX6O43752 255 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 XYLBO75191 536 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 CFHP08603 1231 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 HARSP12081 509 aaKnown RBP20.5■□□□□ 0.87
PNKP-213ENST00000599543 PLS3P13797 630 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 PROZP22891 400 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 TKTP29401 623 aaKnown RBP20.5■□□□□ 0.87
PNKP-213ENST00000599543 HOXA9P31269 272 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 OR1D2P34982 312 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 CWF19L1Q69YN2 538 aaKnown RBP20.5■□□□□ 0.87
PNKP-213ENST00000599543 ALKAL1Q6UXT8 129 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 ANKS3Q6ZW76 656 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 GRASPQ7Z6J2 395 aaPredicted RBP20.5■□□□□ 0.87
PNKP-213ENST00000599543 C3orf58Q8NDZ4 430 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 SLC7A14Q8TBB6 771 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 SPIRE2Q8WWL2 714 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 DDX27Q96GQ7 796 aaKnown RBP20.5■□□□□ 0.87
PNKP-213ENST00000599543 SNX27Q96L92 541 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 PNMA5Q96PV4 448 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 KCND2Q9NZV8 630 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 CDY1Q9Y6F8 540 aa20.5■□□□□ 0.87
PNKP-213ENST00000599543 CCL16O15467 120 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 SRFP11831 508 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 RFX1P22670 979 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 SLC12A3P55017 1021 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 SOX4Q06945 474 aaPredicted RBP20.49■□□□□ 0.87
PNKP-213ENST00000599543 RAB33AQ14088 237 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 XKR4Q5GH76 650 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 AXDND1Q5T1B0 1012 aaPredicted RBP20.49■□□□□ 0.87
PNKP-213ENST00000599543 SLC44A3Q8N4M1 653 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 SYT2Q8N9I0 419 aaPredicted RBP20.49■□□□□ 0.87
PNKP-213ENST00000599543 NTPCRQ9BSD7 190 aaKnown RBP20.49■□□□□ 0.87
PNKP-213ENST00000599543 WNT16Q9UBV4 365 aa20.49■□□□□ 0.87
PNKP-213ENST00000599543 ZFP37Q9Y6Q3 630 aaPredicted RBP20.49■□□□□ 0.87
PNKP-213ENST00000599543 CFAP54Q96N23 3096 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 I3L4J1 428 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 PODXLO00592 558 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 ABLIM1O14639 778 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 TOM1L1O75674 476 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 PLA2G4BP0C869 781 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 AOC1P19801 751 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 IGFBP6P24592 240 aaPredicted RBP20.48■□□□□ 0.87
PNKP-213ENST00000599543 BRCC3P46736 316 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 PKP1Q13835 747 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 NOLC1Q14978 699 aaKnown RBP eCLIP20.48■□□□□ 0.87
PNKP-213ENST00000599543 TMEM161BQ8NDZ6 487 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 ZMAT2Q96NC0 199 aaKnown RBP20.48■□□□□ 0.87
PNKP-213ENST00000599543 CNTN3Q9P232 1028 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 BACE2Q9Y5Z0 518 aa20.48■□□□□ 0.87
PNKP-213ENST00000599543 ANHXE9PGG2 379 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 STK25O00506 426 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 KCNE1P15382 129 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 NPR3P17342 541 aa20.47■□□□□ 0.87
PNKP-213ENST00000599543 NTHL1P78549 312 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms