RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 KIF12Q96FN5 646 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 OSBPL7Q9BZF2 842 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 IMPG2Q9BZV3 1241 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 MTMR12Q9C0I1 747 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 UBN1Q9NPG3 1134 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 RAB20Q9NX57 234 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 CEP72Q9P209 647 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 LUC7L2Q9Y383 392 aaKnown RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 R3HCC1Q9Y3T6 440 aaKnown RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 HES2Q9Y543 173 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.69■□□□□ 0.26
UPF1-206ENST00000598471 TANC1Q9C0D5 1861 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 UMODL1Q5DID0 1318 aa16.69■□□□□ 0.26
UPF1-206ENST00000598471 A0A0U1RQF3 1178 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 MGEA5O60502 916 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 NBNO60934 754 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 ZC3H11AO75152 810 aaKnown RBP eCLIP16.68■□□□□ 0.26
UPF1-206ENST00000598471 HLA-DRAP01903 254 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 SLC9A1P19634 815 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 AKAP5P24588 427 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 CASP14P31944 242 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 CYP2C18P33260 490 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 CCL23P55773 120 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 TRPC3Q13507 836 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 PLEKHG4Q58EX7 1191 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 WDR44Q5JSH3 913 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 TDRD10Q5VZ19 366 aaKnown RBP16.68■□□□□ 0.26
UPF1-206ENST00000598471 MRPL10Q7Z7H8 261 aaKnown RBP16.68■□□□□ 0.26
UPF1-206ENST00000598471 EFCAB13Q8IY85 973 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 BEST2Q8NFU1 509 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 OR5B17Q8NGF7 314 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 TAS1R2Q8TE23 839 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 CPLX3Q8WVH0 158 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 ZNF516Q92618 1163 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 FAM81BQ96LP2 452 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 RPS6KC1Q96S38 1066 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 TTYH3Q9C0H2 523 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 WNT8AQ9H1J5 351 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 PRDM5Q9NQX1 630 aaPredicted RBP16.68■□□□□ 0.26
UPF1-206ENST00000598471 RGS18Q9NS28 235 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 RNF216Q9NWF9 866 aaPredicted RBP16.68■□□□□ 0.26
UPF1-206ENST00000598471 CNTN3Q9P232 1028 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 CAPN11Q9UMQ6 739 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 GIT1Q9Y2X7 761 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 PTPRJQ12913 1337 aa16.68■□□□□ 0.26
UPF1-206ENST00000598471 RALGAPA2Q2PPJ7 1873 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 MKI67P46013 3256 aaKnown RBP16.67■□□□□ 0.26
UPF1-206ENST00000598471 MFAP3LO75121 409 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 CLSTN1O94985 981 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 CXCL10P02778 98 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 NFICP08651 508 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 POLR2FP61218 127 aaKnown RBP16.67■□□□□ 0.26
UPF1-206ENST00000598471 ZBED6P86452 979 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 NCOA4Q13772 614 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 KLHDC7AQ5VTJ3 777 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 SLC24A5Q71RS6 500 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 TRAPPC11Q7Z392 1133 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 SCLYQ96I15 445 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 NT5C1BQ96P26 610 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 HTATIP2Q9BUP3 242 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 NUCKS1Q9H1E3 243 aaKnown RBP16.67■□□□□ 0.26
UPF1-206ENST00000598471 GANQ9H2C0 597 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 TSPYL2Q9H2G4 693 aaPredicted RBP16.67■□□□□ 0.26
UPF1-206ENST00000598471 APEX2Q9UBZ4 518 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 FBXL5Q9UKA1 691 aa16.67■□□□□ 0.26
UPF1-206ENST00000598471 KIAA0355O15063 1070 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 TIMP1P01033 207 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 ACTN1P12814 892 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 UCHL3P15374 230 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 KCNE1P15382 129 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 KRT9P35527 623 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 FXR1P51114 621 aaKnown RBP eCLIP16.66■□□□□ 0.26
UPF1-206ENST00000598471 XKR4Q5GH76 650 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 ALKAL1Q6UXT8 129 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 ECHDC2Q86YB7 292 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 FMNL3Q8IVF7 1028 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 RNF169Q8NCN4 708 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 DBF4BQ8NFT6 615 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 RNF39Q9H2S5 420 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 RSAD1Q9HA92 442 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 SLC38A7Q9NVC3 462 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 ZNHIT6Q9NWK9 470 aaKnown RBP16.66■□□□□ 0.26
UPF1-206ENST00000598471 PCDH10Q9P2E7 1040 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 PRKAG2Q9UGJ0 569 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 ITGA11Q9UKX5 1188 aa16.66■□□□□ 0.26
UPF1-206ENST00000598471 UBQLN1Q9UMX0 589 aaKnown RBP16.66■□□□□ 0.26
UPF1-206ENST00000598471 MEFVO15553 781 aaPredicted RBP16.65■□□□□ 0.26
UPF1-206ENST00000598471 EOMESO95936 686 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 RAG1P15918 1043 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 ADKP55263 362 aaKnown RBP16.65■□□□□ 0.26
UPF1-206ENST00000598471 HS1BP3Q53T59 392 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 ENOSF1Q7L5Y1 443 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 CCDC112Q8NEF3 446 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 OR8K1Q8NGG5 319 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 LMO3Q8TAP4 145 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 TAF4BQ92750 862 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 SPAG5Q96R06 1193 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 PANX2Q96RD6 677 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 SIX2Q9NPC8 291 aa16.65■□□□□ 0.26
UPF1-206ENST00000598471 NLRC4Q9NPP4 1024 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms