RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 CLIC6Q96NY7 704 aa16.49■□□□□ 0.23
LIG1-215ENST00000597901 KCNH6Q9H252 994 aa16.49■□□□□ 0.23
LIG1-215ENST00000597901 ZSCAN16Q9H4T2 348 aaPredicted RBP16.49■□□□□ 0.23
LIG1-215ENST00000597901 PARVGQ9HBI0 331 aa16.49■□□□□ 0.23
LIG1-215ENST00000597901 GOLGA2P5Q9HBQ8 144 aa16.49■□□□□ 0.23
LIG1-215ENST00000597901 SLC38A7Q9NVC3 462 aa16.49■□□□□ 0.23
LIG1-215ENST00000597901 CCDC39Q9UFE4 941 aa16.49■□□□□ 0.23
LIG1-215ENST00000597901 TMEM221A6NGB7 291 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 M0R296 226 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 TRAK2O60296 914 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 FGFR3P22607 806 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 MCL1Q07820 350 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 SLC39A14Q15043 492 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 PSMD5Q16401 504 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.48■□□□□ 0.23
LIG1-215ENST00000597901 TDRD5Q8NAT2 981 aaKnown RBP16.48■□□□□ 0.23
LIG1-215ENST00000597901 KREMEN2Q8NCW0 462 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 PBXIP1Q96AQ6 731 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 USP28Q96RU2 1077 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 RHOBTB2Q9BYZ6 727 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 HAPLN2Q9GZV7 340 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 ZHX3Q9H4I2 956 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 CNTN3Q9P232 1028 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 ANKFY1Q9P2R3 1169 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 TBX20Q9UMR3 447 aa16.48■□□□□ 0.23
LIG1-215ENST00000597901 ADAM12O43184 909 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 TRAPPC3O43617 180 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 PAPLNO95428 1278 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 SCP2P22307 547 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 RPL9P32969 192 aaKnown RBP16.47■□□□□ 0.23
LIG1-215ENST00000597901 MATR3P43243 847 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIG1-215ENST00000597901 BRCC3P46736 316 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 SIGLEC14Q08ET2 396 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 NOLC1Q14978 699 aaKnown RBP eCLIP16.47■□□□□ 0.23
LIG1-215ENST00000597901 RRAGBQ5VZM2 374 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 PDXDC1Q6P996 788 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 CCDC149Q6ZUS6 474 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 OTOP3Q7RTS5 596 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 C3orf58Q8NDZ4 430 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 C18orf25Q96B23 403 aaPredicted RBP16.47■□□□□ 0.23
LIG1-215ENST00000597901 ZNF707Q96C28 371 aaPredicted RBP16.47■□□□□ 0.23
LIG1-215ENST00000597901 ACSF2Q96CM8 615 aaPredicted RBP16.47■□□□□ 0.23
LIG1-215ENST00000597901 BICD1Q96G01 975 aa16.47■□□□□ 0.23
LIG1-215ENST00000597901 WDR6Q9NNW5 1121 aaKnown RBP16.47■□□□□ 0.23
LIG1-215ENST00000597901 C5orf42Q9H799 3197 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 I3L4J1 428 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 ZMYND10O75800 440 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 ASGR2P07307 311 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 CLTAP09496 248 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 NMT1P30419 496 aaKnown RBP16.46■□□□□ 0.23
LIG1-215ENST00000597901 OR1D2P34982 312 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 LIG4P49917 911 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 GTF2BQ00403 316 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 RAB33AQ14088 237 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 SMG7Q92540 1137 aaKnown RBP16.46■□□□□ 0.23
LIG1-215ENST00000597901 FIZ1Q96SL8 496 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 PANK2Q9BZ23 570 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 PRKD2Q9BZL6 878 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 PLEKHA5Q9HAU0 1116 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 PIDD1Q9HB75 910 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 ZDHHC7Q9NXF8 308 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 SORCS3Q9UPU3 1222 aa16.46■□□□□ 0.23
LIG1-215ENST00000597901 MORC2Q9Y6X9 1032 aaPredicted RBP16.46■□□□□ 0.23
LIG1-215ENST00000597901 PODXLO00592 558 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 TBCAO75347 108 aaKnown RBP16.45■□□□□ 0.22
LIG1-215ENST00000597901 PIGRP01833 764 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 TKTP29401 623 aaKnown RBP16.45■□□□□ 0.22
LIG1-215ENST00000597901 RSPO2Q6UXX9 243 aaPredicted RBP16.45■□□□□ 0.22
LIG1-215ENST00000597901 SV2BQ7L1I2 683 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 DYMQ7RTS9 669 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 SUGP1Q8IWZ8 645 aaKnown RBP16.45■□□□□ 0.22
LIG1-215ENST00000597901 KRI1Q8N9T8 703 aaKnown RBP16.45■□□□□ 0.22
LIG1-215ENST00000597901 ASIC4Q96FT7 647 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 TFIP11Q9UBB9 837 aaKnown RBP16.45■□□□□ 0.22
LIG1-215ENST00000597901 MTRRQ9UBK8 725 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 STK17AQ9UEE5 414 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 BACE2Q9Y5Z0 518 aa16.45■□□□□ 0.22
LIG1-215ENST00000597901 TTC26A0AVF1 554 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 K7ENM7 598 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 HOXD11P31277 338 aaPredicted RBP16.44■□□□□ 0.22
LIG1-215ENST00000597901 TXLNAP40222 546 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 TNFSF9P41273 254 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 NASPP49321 788 aaPredicted RBP16.44■□□□□ 0.22
LIG1-215ENST00000597901 SPAG1Q07617 926 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 ZBTB6Q15916 424 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 KYAT1Q16773 422 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 ZC2HC1CQ53FD0 456 aaPredicted RBP16.44■□□□□ 0.22
LIG1-215ENST00000597901 ANKS3Q6ZW76 656 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 ZNF720Q7Z2F6 126 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 UBALD2Q8IYN6 164 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 FBXW11Q9UKB1 542 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 GTF3C3Q9Y5Q9 886 aa16.44■□□□□ 0.22
LIG1-215ENST00000597901 A0A0B4J269 797 aa16.43■□□□□ 0.22
LIG1-215ENST00000597901 MYMKA6NI61 221 aa16.43■□□□□ 0.22
LIG1-215ENST00000597901 LACTBL1A8MY62 500 aa16.43■□□□□ 0.22
LIG1-215ENST00000597901 ANKRD63C9JTQ0 380 aa16.43■□□□□ 0.22
LIG1-215ENST00000597901 HNRNPDLO14979 420 aaKnown RBP16.43■□□□□ 0.22
LIG1-215ENST00000597901 OGTO15294 1046 aa16.43■□□□□ 0.22
LIG1-215ENST00000597901 N4BP1O75113 896 aaKnown RBP16.43■□□□□ 0.22
LIG1-215ENST00000597901 CXCL8P10145 99 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms