RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 ABCB4P21439 1286 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 HSPA9P38646 679 aaKnown RBP11.39□□□□□ -0.59
ZNF540-208ENST00000589857 USP8P40818 1118 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 IRX3P78415 501 aaPredicted RBP11.39□□□□□ -0.59
ZNF540-208ENST00000589857 CDR2Q01850 454 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 DOCK1Q14185 1865 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 HLTFQ14527 1009 aaKnown RBP eCLIP11.39□□□□□ -0.59
ZNF540-208ENST00000589857 TMEM132BQ14DG7 1078 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 EMC2Q15006 297 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 PSMD6Q15008 389 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 TRIM72Q6ZMU5 477 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 RUFY4Q6ZNE9 571 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 RIOX2Q8IUF8 465 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 ARHGEF19Q8IW93 802 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 ARFGAP2Q8N6H7 521 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 DEPTORQ8TB45 409 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 CEP89Q96ST8 783 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 FAM107BQ9H098 131 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 A1CFQ9NQ94 594 aaKnown RBP11.39□□□□□ -0.59
ZNF540-208ENST00000589857 ZNF302Q9NR11 478 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 MTMR10Q9NXD2 777 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 EHD2Q9NZN4 543 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 ARHGAP28Q9P2N2 729 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 OGDHLQ9ULD0 1010 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 PACSIN2Q9UNF0 486 aaPredicted RBP11.39□□□□□ -0.59
ZNF540-208ENST00000589857 SZT2Q5T011 3432 aa11.39□□□□□ -0.59
ZNF540-208ENST00000589857 LOC102724159A0A0B4J2E5 919 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 ERICH4A6NGS2 130 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 SPDYE16A6NNV3 312 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 HMGB1P1B2RPK0 211 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 ATG7O95352 703 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 SLC25A27O95847 323 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 CYP1A2P05177 515 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 ADRB2P07550 413 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 GLI1P08151 1106 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 TGFB3P10600 412 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 TBXAS1P24557 533 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 CTNNA2P26232 953 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 MAPK4P31152 587 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 CHRNA3P32297 505 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 MAN1A1P33908 653 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 MAGEA10P43363 369 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 EFNA5P52803 228 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 PTENP60484 403 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 DLG4P78352 724 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 PWP2Q15269 919 aaKnown RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 SURF1Q15526 300 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 ZSCAN26Q16670 478 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 C1orf220Q5T0J3 134 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 FAM109BQ6ICB4 259 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 CBWD2Q8IUF1 395 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 GSPT2Q8IYD1 628 aaKnown RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 ANKRD35Q8N283 1001 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 GPRC5AQ8NFJ5 357 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 EPS8L1Q8TE68 723 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 HDAC7Q8WUI4 952 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 TCP11Q8WWU5 503 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 CASKIN2Q8WXE0 1202 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 RNPC3Q96LT9 517 aaKnown RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 NIFKQ9BYG3 293 aaKnown RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 THAP2Q9H0W7 228 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 TMEM134Q9H6X4 195 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 GPRC5CQ9NQ84 441 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 PDLIM7Q9NR12 457 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 SMARCAL1Q9NZC9 954 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 NFU1Q9UMS0 254 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 RIPK3Q9Y572 518 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 MAFBQ9Y5Q3 323 aaPredicted RBP11.38□□□□□ -0.59
ZNF540-208ENST00000589857 STYXL1Q9Y6J8 313 aa11.38□□□□□ -0.59
ZNF540-208ENST00000589857 ANKRD63C9JTQ0 380 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 PODXLO00592 558 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 DDX3YO15523 660 aaKnown RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 ZNF862O60290 1169 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 MSCO60682 206 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 PHACTR2O75167 634 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 FGGP02679 453 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 SYN1P17600 705 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 SLC1A1P43005 524 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 CARSP49589 748 aaKnown RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 EIF3BP55884 814 aaKnown RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 CLDN10P78369 228 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 BIRC3Q13489 604 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 PRPF4BQ13523 1007 aaKnown RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 LIN9Q5TKA1 542 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 DIS3LQ8TF46 1054 aaKnown RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 CCDC127Q96BQ5 260 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 ZNF653Q96CK0 615 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 ZSWIM1Q9BR11 485 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 IMPG2Q9BZV3 1241 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 TSPYL1Q9H0U9 437 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 PORCNQ9H237 461 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 IKZF4Q9H2S9 585 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 AVENQ9NQS1 362 aaPredicted RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 NOCTQ9UK39 431 aaKnown RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 ZHX1Q9UKY1 873 aaPredicted RBP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.37□□□□□ -0.59
ZNF540-208ENST00000589857 PCDHB2Q9Y5E7 798 aa11.37□□□□□ -0.59
ZNF540-208ENST00000589857 RANBP2P49792 3224 aaKnown RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms