RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 BORCS6Q96GS4 357 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 CEP63Q96MT8 703 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 ASB7Q9H672 318 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 GOLGA2P5Q9HBQ8 144 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 KANSL3Q9P2N6 904 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 DNAJB4Q9UDY4 337 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 KIAA1671Q9BY89 1806 aa11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 RANBP2P49792 3224 aaKnown RBP11.62□□□□□ -0.55
SMARCA4-213ENST00000587988 PTPRJQ12913 1337 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 MAPK13O15264 365 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 IL18RAPO95256 599 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 DLATP10515 647 aaKnown RBP11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 PBX3P40426 434 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 DLG4P78352 724 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 SMAD3P84022 425 aaKnown RBP11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 RNASELQ05823 741 aaKnown RBP11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 DSC1Q08554 894 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 RAB30Q15771 203 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 C1orf220Q5T0J3 134 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 IRF2BP1Q8IU81 584 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 CD302Q8IX05 232 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 COLGALT2Q8IYK4 626 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 ENOX1Q8TC92 643 aaKnown RBP11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 PARD3BQ8TEW8 1205 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 ZNF516Q92618 1163 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 RABGGTAQ92696 567 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 FAM193BQ96PV7 902 aaPredicted RBP11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 PAAF1Q9BRP4 392 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 MRPL9Q9BYD2 267 aaKnown RBP11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 TUBGCP4Q9UGJ1 667 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 MSRAQ9UJ68 235 aa11.61□□□□□ -0.55
SMARCA4-213ENST00000587988 CASTOR2A6NHX0 329 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 LRRIQ3A6PVS8 624 aaPredicted RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 NT5C1B-RDH14C9J2C7 533 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 F8W810 466 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 SLC16A3O15427 465 aaKnown RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 ZC3H11AO75152 810 aaKnown RBP eCLIP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 GALTP07902 379 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 EPB41P11171 864 aaKnown RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 DNAJB2P25686 324 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 SLC11A1P49279 550 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 BCAR1P56945 870 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 TAP1Q03518 808 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 BFSP1Q12934 665 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 TUSC3Q13454 348 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 TMEM132DQ14C87 1099 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 NCAPHQ15003 741 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 TPD52L1Q16890 204 aaPredicted RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 HSP90AA4PQ58FG1 418 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 SPOUT1Q5T280 376 aaKnown RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 SPATA1Q5VX52 437 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 COLGALT1Q8NBJ5 622 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 OR5B17Q8NGF7 314 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 RSPH1Q8WYR4 309 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 CLP1Q92989 425 aaKnown RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 FNBP1Q96RU3 617 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 CGRRF1Q99675 332 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 C17orf80Q9BSJ5 609 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 MKNK1Q9BUB5 465 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 SAMSN1Q9NSI8 373 aaKnown RBP11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 INTS13Q9NVM9 706 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 DERAQ9Y315 318 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 C2CD2Q9Y426 696 aa11.6□□□□□ -0.55
SMARCA4-213ENST00000587988 NLRC5Q86WI3 1866 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 NRP1O14786 923 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 PPEF2O14830 753 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 ALDH2P05091 517 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TRIM49P0CI25 452 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TRIM49CP0CI26 452 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TNNI1P19237 187 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 ZNF165P49910 485 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 CLCNKBP51801 687 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 VAMP7P51809 220 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 MCCD1P59942 119 aaPredicted RBP11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 CLDN10P78369 228 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TFAMQ00059 246 aaKnown RBP11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 SURF1Q15526 300 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 CCDC40Q4G0X9 1142 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 KCNT2Q6UVM3 1135 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 LRSAM1Q6UWE0 723 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 INTS8Q75QN2 995 aaKnown RBP11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 FRMD5Q7Z6J6 570 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TMEM173Q86WV6 379 aaPredicted RBP11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 CREBRFQ8IUR6 639 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 WDR49Q8IV35 697 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 DHX40Q8IX18 779 aaKnown RBP11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 AOPEPQ8N6M6 819 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TMC2Q8TDI7 906 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TIFAQ96CG3 184 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 LRCH3Q96II8 777 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 TSPAN18Q96SJ8 248 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 BPIFA3Q9BQP9 254 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 MTMR12Q9C0I1 747 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 HSD3B7Q9H2F3 369 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 THAP9Q9H5L6 903 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 CERS4Q9HA82 394 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 SLC38A7Q9NVC3 462 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 DPP3Q9NY33 737 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 MTUS1Q9ULD2 1270 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 UBQLN1Q9UMX0 589 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms