RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 SHC4Q6S5L8 630 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 DYMQ7RTS9 669 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 SFR1Q86XK3 245 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 LNX1Q8TBB1 728 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 RIN2Q8WYP3 895 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 C18orf25Q96B23 403 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 TCHPQ9BT92 498 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 C1QTNF1Q9BXJ1 281 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 SFXN1Q9H9B4 322 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 TOPORSQ9NS56 1045 aaPredicted RBP16.58■□□□□ 0.24
CLIP3-202ENST00000585466 CCDC39Q9UFE4 941 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 MUTYHQ9UIF7 546 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 ZDHHC9Q9Y397 364 aa16.58■□□□□ 0.24
CLIP3-202ENST00000585466 A0A0B4J269 797 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 TTC26A0AVF1 554 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 ANKRD63C9JTQ0 380 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 CLDN3O15551 220 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 ADAM12O43184 909 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 DCXO43602 365 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 TBCAO75347 108 aaKnown RBP16.57■□□□□ 0.24
CLIP3-202ENST00000585466 C1RP00736 705 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 KRT18P05783 430 aaKnown RBP16.57■□□□□ 0.24
CLIP3-202ENST00000585466 ADH1AP07327 375 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 CXCL8P10145 99 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 FGFR3P22607 806 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 YARSP54577 528 aaKnown RBP16.57■□□□□ 0.24
CLIP3-202ENST00000585466 FAM171A1Q5VUB5 890 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 DCLRE1AQ6PJP8 1040 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 TMC5Q6UXY8 1006 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 CCDC73Q6ZRK6 1079 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 ZNF720Q7Z2F6 126 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 GPR149Q86SP6 731 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 SPRYD3Q8NCJ5 442 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 CMASQ8NFW8 434 aaPredicted RBP16.57■□□□□ 0.24
CLIP3-202ENST00000585466 RPGRIP1Q96KN7 1286 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 UROC1Q96N76 676 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 ZNF396Q96N95 335 aaPredicted RBP16.57■□□□□ 0.24
CLIP3-202ENST00000585466 CLSTN3Q9BQT9 956 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 LRFN3Q9BTN0 628 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 TTPALQ9BTX7 342 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 FGFBP2Q9BYJ0 223 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 PANK2Q9BZ23 570 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 MAN1C1Q9NR34 630 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.57■□□□□ 0.24
CLIP3-202ENST00000585466 STYXL1Q9Y6J8 313 aa16.57■□□□□ 0.24
CLIP3-202ENST00000585466 FAM86C2PA6NEL3 165 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 HNRNPDLO14979 420 aaKnown RBP16.56■□□□□ 0.24
CLIP3-202ENST00000585466 TGM5O43548 720 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 GPR37L1O60883 481 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 B3GAT3O94766 335 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 GLUD1P00367 558 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 CLTAP09496 248 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 PDIA4P13667 645 aaKnown RBP16.56■□□□□ 0.24
CLIP3-202ENST00000585466 COL9A1P20849 921 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 TXLNAP40222 546 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 BRCC3P46736 316 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 ZBTB6Q15916 424 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 ENOX2Q16206 610 aaKnown RBP16.56■□□□□ 0.24
CLIP3-202ENST00000585466 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.56■□□□□ 0.24
CLIP3-202ENST00000585466 SV2BQ7L1I2 683 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 ZNF707Q96C28 371 aaPredicted RBP16.56■□□□□ 0.24
CLIP3-202ENST00000585466 NECTIN4Q96NY8 510 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 RHOBTB2Q9BYZ6 727 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 ZHX3Q9H4I2 956 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 TUBGCP4Q9UGJ1 667 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 ZNF318Q5VUA4 2279 aa16.56■□□□□ 0.24
CLIP3-202ENST00000585466 TCHHQ07283 1943 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 C2CD4DB7Z1M9 353 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 I3L4J1 428 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 PODXLO00592 558 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 CUTAO60888 179 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 SPATA31D3P0C874 917 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 STAT6P42226 847 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 MTHFRP42898 656 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 LIG4P49917 911 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 CASP5P51878 434 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 KCNA1Q09470 495 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 ELAVL2Q12926 359 aaKnown RBP16.55■□□□□ 0.24
CLIP3-202ENST00000585466 CES5AQ6NT32 575 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 RSPO2Q6UXX9 243 aaPredicted RBP16.55■□□□□ 0.24
CLIP3-202ENST00000585466 SPATA31D4Q6ZUB0 917 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 PDILTQ8N807 584 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 TMEM87AQ8NBN3 555 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 BICD1Q96G01 975 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 DDX27Q96GQ7 796 aaKnown RBP16.55■□□□□ 0.24
CLIP3-202ENST00000585466 CHAMP1Q96JM3 812 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 SLC38A7Q9NVC3 462 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 KBTBD4Q9NVX7 518 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 SEL1LQ9UBV2 794 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 FBXW11Q9UKB1 542 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 NOTCH4Q99466 2003 aa16.55■□□□□ 0.24
CLIP3-202ENST00000585466 OGTO15294 1046 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 RFPL2O75678 378 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 ALADP13716 330 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 SP100P23497 879 aaPredicted RBP16.54■□□□□ 0.24
CLIP3-202ENST00000585466 TKTP29401 623 aaKnown RBP16.54■□□□□ 0.24
CLIP3-202ENST00000585466 ADSSP30520 456 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 DNM1Q05193 864 aaKnown RBP16.54■□□□□ 0.24
CLIP3-202ENST00000585466 SPAG1Q07617 926 aa16.54■□□□□ 0.24
CLIP3-202ENST00000585466 PSMD5Q16401 504 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms