RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TULP1O00294 542 aaPredicted RBP11.61□□□□□ -0.55
SS18-213ENST00000579640 MEFVO15553 781 aaPredicted RBP11.61□□□□□ -0.55
SS18-213ENST00000579640 EVI5O60447 810 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 C4BPAP04003 597 aaKnown RBP11.61□□□□□ -0.55
SS18-213ENST00000579640 ATF7P17544 494 aaPredicted RBP11.61□□□□□ -0.55
SS18-213ENST00000579640 ITGB8P26012 769 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 TFAMQ00059 246 aaKnown RBP11.61□□□□□ -0.55
SS18-213ENST00000579640 SYCP1Q15431 976 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 EXOC3L4Q17RC7 722 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 SPECC1LQ69YQ0 1117 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 JADE1Q6IE81 842 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 EFCAB13Q8IY85 973 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 ZNF516Q92618 1163 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 RPS6KC1Q96S38 1066 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 NUP58Q9BVL2 599 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 RSAD1Q9HA92 442 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 IL23AQ9NPF7 189 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 DAAM1Q9Y4D1 1078 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.61□□□□□ -0.552e-6■■□□□ 14.5
SS18-213ENST00000579640 DNAH12Q6ZR08 3092 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 TET1Q8NFU7 2136 aa11.61□□□□□ -0.55
SS18-213ENST00000579640 GOLGA6L6A8MZA4 724 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 INPPL1O15357 1258 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 HOXA2O43364 376 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 BAIAP3O94812 1187 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 NFICP08651 508 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 ACTN1P12814 892 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 CSF2RAP15509 400 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 BIRC3Q13489 604 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 EPC2Q52LR7 807 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 LMBRD2Q68DH5 695 aaPredicted RBP11.6□□□□□ -0.55
SS18-213ENST00000579640 AGMOQ6ZNB7 445 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 DRC7Q8IY82 874 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 FBXL13Q8NEE6 735 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 BEST2Q8NFU1 509 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 KIF12Q96FN5 646 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 PCMTD1Q96MG8 357 aaPredicted RBP11.6□□□□□ -0.55
SS18-213ENST00000579640 SLC38A7Q9NVC3 462 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 GCNT4Q9P109 453 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 UBQLN1Q9UMX0 589 aaKnown RBP11.6□□□□□ -0.55
SS18-213ENST00000579640 SIK3Q9Y2K2 1263 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 PTPRJQ12913 1337 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 PDCD11Q14690 1871 aaKnown RBP11.6□□□□□ -0.55
SS18-213ENST00000579640 MICAL3Q7RTP6 2002 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 SMIM28A0A1B0GU29 152 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 ZC3H11AO75152 810 aaKnown RBP eCLIP11.6□□□□□ -0.55
SS18-213ENST00000579640 PHACTR2O75167 634 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 CYP3A5P20815 502 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 FPGSQ05932 587 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 CCDC173Q0VFZ6 552 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 KCNMA1Q12791 1236 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 TRIM14Q14142 442 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 ZBTB6Q15916 424 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 FIGNQ5HY92 759 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 TDRD10Q5VZ19 366 aaKnown RBP11.6□□□□□ -0.55
SS18-213ENST00000579640 TRAPPC11Q7Z392 1133 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 TMC6Q7Z403 805 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 RNF169Q8NCN4 708 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 EHBP1Q8NDI1 1231 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 OR5B17Q8NGF7 314 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 LPPQ93052 612 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 VWCEQ96DN2 955 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 PDLIM2Q96JY6 352 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 MTMR12Q9C0I1 747 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 PLCB1Q9NQ66 1216 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 RAB20Q9NX57 234 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 KLK14Q9P0G3 267 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 IMPACTQ9P2X3 320 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 ITGA11Q9UKX5 1188 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 LRFN2Q9ULH4 789 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 PCDHB7Q9Y5E2 793 aa11.6□□□□□ -0.55
SS18-213ENST00000579640 LTBP2Q14767 1821 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.59□□□□□ -0.55
SS18-213ENST00000579640 ARL5CA6NH57 179 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 PON1P27169 355 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 MLH1P40692 756 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 TRPC3Q13507 836 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 TCTN1Q2MV58 587 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 GLB1LQ6UWU2 654 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 NPAS4Q8IUM7 802 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 CCDC150Q8NCX0 1101 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 NEK11Q8NG66 645 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 TAS1R2Q8TE23 839 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 ZMAT2Q96NC0 199 aaKnown RBP11.59□□□□□ -0.55
SS18-213ENST00000579640 GAD1Q99259 594 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 CRACR2AQ9BSW2 395 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 LSM14BQ9BX40 385 aaKnown RBP11.59□□□□□ -0.55
SS18-213ENST00000579640 EDEM3Q9BZQ6 932 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 INTS2Q9H0H0 1204 aaKnown RBP11.59□□□□□ -0.55
SS18-213ENST00000579640 DPP3Q9NY33 737 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 R3HCC1Q9Y3T6 440 aaKnown RBP11.59□□□□□ -0.55
SS18-213ENST00000579640 TRIP11Q15643 1979 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 TTC3P53804 2025 aa11.59□□□□□ -0.55
SS18-213ENST00000579640 MEIS3P2A8K0S8 358 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 PTGESO14684 152 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 OFD1O75665 1012 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 HLA-DRAP01903 254 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 THP07101 528 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 TPM1P09493 284 aa11.58□□□□□ -0.56
SS18-213ENST00000579640 TRIM21P19474 475 aaKnown RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms