RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 TTYH3Q9C0H2 523 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 ELAC1Q9H777 363 aaKnown RBP17.46■□□□□ 0.39
SS18-211ENST00000578954 PLCB1Q9NQ66 1216 aa17.46■□□□□ 0.39
SS18-211ENST00000578954 PRDM5Q9NQX1 630 aaPredicted RBP17.46■□□□□ 0.39
SS18-211ENST00000578954 LTBP2Q14767 1821 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 ENPP3O14638 875 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 PON1P27169 355 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 CETN1Q12798 172 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 TMEM132DQ14C87 1099 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 PTPN21Q16825 1174 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 TDRD10Q5VZ19 366 aaKnown RBP17.45■□□□□ 0.38
SS18-211ENST00000578954 LMBRD2Q68DH5 695 aaPredicted RBP17.45■□□□□ 0.38
SS18-211ENST00000578954 TMEM199Q8N511 208 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 IQCDQ96DY2 449 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 FAM212AQ96EL1 285 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 HTATIP2Q9BUP3 242 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 APOL6Q9BWW8 343 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 MMRN2Q9H8L6 949 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 UBN1Q9NPG3 1134 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 GCNT4Q9P109 453 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 IMPACTQ9P2X3 320 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 PARP2Q9UGN5 583 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 DAAM1Q9Y4D1 1078 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.45■□□□□ 0.38
SS18-211ENST00000578954 TTC3P53804 2025 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 MICAL3Q7RTP6 2002 aa17.45■□□□□ 0.38
SS18-211ENST00000578954 TRIP11Q15643 1979 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 MEIS3P2A8K0S8 358 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 VNN1O95497 513 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 TMEM191BP0C7N4 346 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 TRIM14Q14142 442 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 TRIM65Q6PJ69 517 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 TRAPPC11Q7Z392 1133 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 TMC6Q7Z403 805 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 CRIPAKQ8N1N5 446 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 EHBP1Q8NDI1 1231 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 GSTCDQ8NEC7 633 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 FBXL13Q8NEE6 735 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 CXorf38Q8TB03 319 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 CACTINQ8WUQ7 758 aaKnown RBP17.44■□□□□ 0.38
SS18-211ENST00000578954 ANKRD36BP1Q96IX9 119 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 FAM84AQ96KN4 292 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 ZMAT2Q96NC0 199 aaKnown RBP17.44■□□□□ 0.38
SS18-211ENST00000578954 CRACR2AQ9BSW2 395 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 NUP58Q9BVL2 599 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 MTMR12Q9C0I1 747 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 INTS2Q9H0H0 1204 aaKnown RBP17.44■□□□□ 0.38
SS18-211ENST00000578954 CXCL16Q9H2A7 254 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 SIX2Q9NPC8 291 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 TMEM161AQ9NX61 479 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 FBXL5Q9UKA1 691 aa17.44■□□□□ 0.38
SS18-211ENST00000578954 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.44■□□□□ 0.382e-6■■□□□ 14.5
SS18-211ENST00000578954 SMIM28A0A1B0GU29 152 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.43■□□□□ 0.38
SS18-211ENST00000578954 PTGESO14684 152 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 ZC3H11AO75152 810 aaKnown RBP eCLIP17.43■□□□□ 0.38
SS18-211ENST00000578954 TNNC2P02585 160 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 SLC9A1P19634 815 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 CYP3A5P20815 502 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 KLK7P49862 253 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 TFAMQ00059 246 aaKnown RBP17.43■□□□□ 0.38
SS18-211ENST00000578954 DEFB128Q7Z7B8 93 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 RPUSD2Q8IZ73 545 aaKnown RBP17.43■□□□□ 0.38
SS18-211ENST00000578954 C1orf127Q8N9H9 656 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 TAS1R2Q8TE23 839 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 SEMA4DQ92854 862 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 LPPQ93052 612 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 KIF12Q96FN5 646 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 PPP1R10Q96QC0 940 aaKnown RBP17.43■□□□□ 0.38
SS18-211ENST00000578954 LSM14BQ9BX40 385 aaKnown RBP17.43■□□□□ 0.38
SS18-211ENST00000578954 EDEM3Q9BZQ6 932 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 GANQ9H2C0 597 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 RSAD1Q9HA92 442 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 RNF19AQ9NV58 838 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 RAB20Q9NX57 234 aa17.43■□□□□ 0.38
SS18-211ENST00000578954 UBQLN1Q9UMX0 589 aaKnown RBP17.43■□□□□ 0.38
SS18-211ENST00000578954 A0A1W2PQJ5 194 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 XPOTO43592 962 aaKnown RBP17.42■□□□□ 0.38
SS18-211ENST00000578954 NOL4O94818 638 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 HLA-DRAP01903 254 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 GYPCP04921 128 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 CSF2RAP15509 400 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 BIRC3Q13489 604 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 RSPH1Q8WYR4 309 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 GAD1Q99259 594 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 IL23AQ9NPF7 189 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 RNF216Q9NWF9 866 aaPredicted RBP17.42■□□□□ 0.38
SS18-211ENST00000578954 KLK14Q9P0G3 267 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 PRKAG2Q9UGJ0 569 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 SIX4Q9UIU6 781 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 ITGA11Q9UKX5 1188 aa17.42■□□□□ 0.38
SS18-211ENST00000578954 ABHD14A-ACY1A0A1B0GW23 586 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 ARL5CA6NH57 179 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 EPHB6O15197 1021 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 EFCAB14O75071 495 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 RFX1P22670 979 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 MLH1P40692 756 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 PPIGQ13427 754 aaKnown RBP eCLIP17.41■□□□□ 0.384e-6■■□□□ 13.5
SS18-211ENST00000578954 NCOA4Q13772 614 aa17.41■□□□□ 0.38
SS18-211ENST00000578954 IKBKEQ14164 716 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms