RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 GPR149Q86SP6 731 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 HDAC7Q8WUI4 952 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 PIK3R5Q8WYR1 880 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 PLEKHA5Q9HAU0 1116 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 GOLGA2P5Q9HBQ8 144 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 MAN1C1Q9NR34 630 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 MUTYHQ9UIF7 546 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 NR2E1Q9Y466 385 aa22.17■■□□□ 1.14
CLK3-225ENST00000569063 MYH15Q9Y2K3 1946 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 A0A087X0B3 334 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 MYMKA6NI61 221 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 F13A1P00488 732 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 CLTAP09496 248 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 WEE2P0C1S8 567 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 IGFBP6P24592 240 aaPredicted RBP22.16■■□□□ 1.14
CLK3-225ENST00000569063 MATR3P43243 847 aaKnown RBP eCLIP22.16■■□□□ 1.14
CLK3-225ENST00000569063 KYAT1Q16773 422 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 SEZ6Q53EL9 994 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 PDXDC1Q6P996 788 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 LILRA6Q6PI73 481 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 PRSS55Q6UWB4 352 aaPredicted RBP22.16■■□□□ 1.14
CLK3-225ENST00000569063 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.16■■□□□ 1.14
CLK3-225ENST00000569063 C15orf39Q6ZRI6 1047 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 CMASQ8NFW8 434 aaPredicted RBP22.16■■□□□ 1.14
CLK3-225ENST00000569063 LNX1Q8TBB1 728 aaPredicted RBP22.16■■□□□ 1.14
CLK3-225ENST00000569063 LRFN3Q9BTN0 628 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 SEL1LQ9UBV2 794 aa22.16■■□□□ 1.14
CLK3-225ENST00000569063 SPDYE4A6NLX3 237 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 TGM5O43548 720 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 TRAPPC3O43617 180 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 FAM189A1O60320 539 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 PAPLNO95428 1278 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 RPL17P18621 184 aaKnown RBP22.15■■□□□ 1.14
CLK3-225ENST00000569063 FGFR3P22607 806 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 RPL9P32969 192 aaKnown RBP22.15■■□□□ 1.14
CLK3-225ENST00000569063 STAT6P42226 847 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 FOXD4L5Q5VV16 416 aaPredicted RBP22.15■■□□□ 1.14
CLK3-225ENST00000569063 ZNF720Q7Z2F6 126 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 CEP57Q86XR8 500 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 PALB2Q86YC2 1186 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 MAP4K3Q8IVH8 894 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 C3orf58Q8NDZ4 430 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 FOXD4L4Q8WXT5 416 aaPredicted RBP22.15■■□□□ 1.14
CLK3-225ENST00000569063 DNAJC19Q96DA6 116 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 CLSTN3Q9BQT9 956 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 RHOBTB2Q9BYZ6 727 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 PANK2Q9BZ23 570 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 PLEKHA4Q9H4M7 779 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 TRIP11Q15643 1979 aa22.15■■□□□ 1.14
CLK3-225ENST00000569063 PLXNA3P51805 1871 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 A0A0B4J269 797 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 TTC26A0AVF1 554 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 CXCL8P10145 99 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 GAP43P17677 238 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 PSMD5Q16401 504 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 ZC2HC1CQ53FD0 456 aaPredicted RBP22.14■■□□□ 1.13
CLK3-225ENST00000569063 SLC39A4Q6P5W5 647 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 CYP26C1Q6V0L0 522 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 SFR1Q86XK3 245 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 FEZF2Q8TBJ5 459 aa22.14■■□□□ 1.13
CLK3-225ENST00000569063 C18orf25Q96B23 403 aaPredicted RBP22.14■■□□□ 1.13
CLK3-225ENST00000569063 CCDC195A0A1B0GUA6 201 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 FAM86C2PA6NEL3 165 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 PODXLO00592 558 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 OGTO15294 1046 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 CUTAO60888 179 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 PKP1Q13835 747 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 ATL3Q6DD88 541 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 GLYCTKQ8IVS8 523 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 SPRYD3Q8NCJ5 442 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 HVCN1Q96D96 273 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 STRA6Q9BX79 667 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 TSHZ2Q9NRE2 1034 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 USTQ9Y2C2 406 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 CITO14578 2027 aa22.13■■□□□ 1.13
CLK3-225ENST00000569063 FRMD3A2A2Y4 597 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 PRR33A8MZF0 331 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 PPP1R37O75864 691 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 ADRB2P07550 413 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 SPATA31D3P0C874 917 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 TNFSF9P41273 254 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 SPATA31D4Q6ZUB0 917 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 PDILTQ8N807 584 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 EDAQ92838 391 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 TSPAN18Q96SJ8 248 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 MSTO1Q9BUK6 570 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 GTF3C5Q9Y5Q8 519 aaPredicted RBP22.12■■□□□ 1.13
CLK3-225ENST00000569063 STYXL1Q9Y6J8 313 aa22.12■■□□□ 1.13
CLK3-225ENST00000569063 C2CD4DB7Z1M9 353 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 COL9A1P20849 921 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 SP100P23497 879 aaPredicted RBP22.11■■□□□ 1.13
CLK3-225ENST00000569063 BRCC3P46736 316 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 ZBTB6Q15916 424 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 ENOX2Q16206 610 aaKnown RBP22.11■■□□□ 1.13
CLK3-225ENST00000569063 ZBTB41Q5SVQ8 909 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 AXDND1Q5T1B0 1012 aaPredicted RBP22.11■■□□□ 1.13
CLK3-225ENST00000569063 SLFN12LQ6IEE8 588 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 SHC4Q6S5L8 630 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 KREMEN2Q8NCW0 462 aa22.11■■□□□ 1.13
CLK3-225ENST00000569063 KCNG4Q8TDN1 519 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms