RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 MAN1C1Q9NR34 630 aa20.1■□□□□ 0.81
CLN3-237ENST00000569030 CNTN3Q9P232 1028 aa20.1■□□□□ 0.81
CLN3-237ENST00000569030 FNIP2Q9P278 1114 aa20.1■□□□□ 0.81
CLN3-237ENST00000569030 MYMKA6NI61 221 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 TBCAO75347 108 aaKnown RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 B3GAT3O94766 335 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 GLUD1P00367 558 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 ZSCAN22P10073 491 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 TXLNAP40222 546 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 MTHFRP42898 656 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 MATR3P43243 847 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-237ENST00000569030 PKP1Q13835 747 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 FOXD4L6Q3SYB3 417 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 ZC2HC1CQ53FD0 456 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 ATAT1Q5SQI0 421 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 FOXD4L3Q6VB84 417 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 LNX1Q8TBB1 728 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 DDX12PQ92771 950 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 C18orf25Q96B23 403 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 RIPOR3Q96MK2 946 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 UROC1Q96N76 676 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 ZNF396Q96N95 335 aaPredicted RBP20.09■□□□□ 0.81
CLN3-237ENST00000569030 NECTIN4Q96NY8 510 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 SFXN1Q9H9B4 322 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.09■□□□□ 0.81
CLN3-237ENST00000569030 RAPGEFL1Q9UHV5 662 aa20.09■□□□□ 0.81
CLN3-237ENST00000569030 TMEM189-UBE2V1I3L0A0 370 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 I3L4J1 428 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 SPTLC2O15270 562 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 PIGRP01833 764 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 COL9A1P20849 921 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 LIG4P49917 911 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 GTF2BQ00403 316 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 ZBTB41Q5SVQ8 909 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 SLC39A4Q6P5W5 647 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 LILRA6Q6PI73 481 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 SV2BQ7L1I2 683 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 GPR149Q86SP6 731 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 PIK3R5Q8WYR1 880 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 DNAJC19Q96DA6 116 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 CLSTN3Q9BQT9 956 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 TSHZ2Q9NRE2 1034 aa20.08■□□□□ 0.81
CLN3-237ENST00000569030 SPDYE4A6NLX3 237 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 HNRNPDLO14979 420 aaKnown RBP20.07■□□□□ 0.8
CLN3-237ENST00000569030 TGM5O43548 720 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 FAM189A1O60320 539 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 F13A1P00488 732 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 CXCL8P10145 99 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 SCP2P22307 547 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 FGFR3P22607 806 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 TNFSF9P41273 254 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 STAT6P42226 847 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 BRCC3P46736 316 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 CCDC73Q6ZRK6 1079 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 SFR1Q86XK3 245 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 TMEM130Q8N3G9 435 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 PDILTQ8N807 584 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 IKZF4Q9H2S9 585 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 SLC38A7Q9NVC3 462 aa20.07■□□□□ 0.8
CLN3-237ENST00000569030 CCDC195A0A1B0GUA6 201 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 C2CD4DB7Z1M9 353 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 ANKRD63C9JTQ0 380 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 ADAM12O43184 909 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 PPP6R2O75170 966 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 RFPL2O75678 378 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 CLTAP09496 248 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 SPAG1Q07617 926 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 ELAVL2Q12926 359 aaKnown RBP20.06■□□□□ 0.8
CLN3-237ENST00000569030 PSMD5Q16401 504 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.06■□□□□ 0.8
CLN3-237ENST00000569030 ZNF720Q7Z2F6 126 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 DDX27Q96GQ7 796 aaKnown RBP20.06■□□□□ 0.8
CLN3-237ENST00000569030 NR2E1Q9Y466 385 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 DOCK8Q8NF50 2099 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 TCHHQ07283 1943 aa20.06■□□□□ 0.8
CLN3-237ENST00000569030 A0A0B4J269 797 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 TTC26A0AVF1 554 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 TISP43B9A030 160 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 PODXLO00592 558 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 YEATS4O95619 227 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 C1RP00736 705 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 PDIA4P13667 645 aaKnown RBP20.05■□□□□ 0.8
CLN3-237ENST00000569030 TKTP29401 623 aaKnown RBP20.05■□□□□ 0.8
CLN3-237ENST00000569030 CREMQ03060 361 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 C15orf39Q6ZRI6 1047 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 MAP4K3Q8IVH8 894 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 CMASQ8NFW8 434 aaPredicted RBP20.05■□□□□ 0.8
CLN3-237ENST00000569030 HDAC7Q8WUI4 952 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 ST6GALNAC4Q9H4F1 302 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 TBC1D7Q9P0N9 293 aa20.05■□□□□ 0.8
CLN3-237ENST00000569030 LACTBL1A8MY62 500 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 OGTO15294 1046 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 ENOX2Q16206 610 aaKnown RBP20.04■□□□□ 0.8
CLN3-237ENST00000569030 RSPO2Q6UXX9 243 aaPredicted RBP20.04■□□□□ 0.8
CLN3-237ENST00000569030 KREMEN2Q8NCW0 462 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 STAMQ92783 540 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 EDAQ92838 391 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 STRA6Q9BX79 667 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 PLEKHA4Q9H4M7 779 aa20.04■□□□□ 0.8
CLN3-237ENST00000569030 PLEKHA5Q9HAU0 1116 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms